Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0955 ATGATAAGTGCTGTTGCTTCTTCCTCTAGCTCTTCTTCTATGTTGTCTCCTAAAAAATATGACGTTTTTCTAAGCTTTCGAGGTGAAGACACACGCAGGAACTTCACTAGCCATCTCTATGAAGCTTTGAAGCAAAAGAAAGTTGAAACCTATATAGATGAACATCTTGAAAAGGGAGATGAAATCTCACCAGGACTCATTAAAGCCATTGAAGATTCTCATGTATCTATTGTGGTCTTCTCAAAGAACTACGCTTCCTCAAAGTGGTGCTTGGTTGAACTCATCAAGATTCTGGATTGCAAGAAAGACCGAGGACAGATTGTAATACCTGTGTTTTACGAGATAGATCCATCAGATGTGAGAAAGCAAACTGGGAGCTACGAACAAGCCTTTGCAAAACATGAGGGGGAACCCAGCTGCAACAAATGGAAAACTGCTCTCACTGAAGCAGCCAACTTGGCTGGGTGGGACTCTCGAACTTATAGGACTGATCCTGAATTACTTAAGGACATTGTTGCAGATGTTTTGCAAAAATTGCCTCCTAGATACCAAAATCAACGTAAAGGACTAGTTGGAATTGAGGAACATTGTGAACATATTGAATCATTACTTAAAATTGGGCCGACAGAAGTTAGAACCCTTGGTATATGGGGTATGGGTGGGATAGGTAAAACGGCCCTTGCTACTACTTTATATGACAAATTATCTCATGAATTTGAAGGCAGTTCCTTCCTCTCAAACGTAAATGAAAAATCAGACAAGCTTGAAAATCACTGTTTTGGTAATTCTGATATGAGTACGCTTCGAGGTAAAAAAGCTCTCATTGTCTTGGACGATGTGGCTACCTCGGAACATCTAGAAAAATTAAAAGTAGATTATGATTTCTTGGAACCAGGAAGTAGAGTCATTGTTACAACTAGAAATAGGGAAATACTTGGCCCCAATGACGAAATTTATCAAGTCAAGGAATTGAGTTCTCATCACTCTGTTCAGCTTTTTTGTTTGACTGTTTTTGGAGAAAAACAACCTAAAGAGGGGTATGAAGACCTATCAGAAAGAGTACTTTCCTATTGCAAAGGTATTCCTTTGGCTTTAAAAGTTATGGGTGCAAGTCTTCGTCGAAAAAGTAAAGAGGCATGGGAGAGTGAATTGAGAAAACTCCAAAAGATTTCGAGTATGGAAATTCATACAGTATTAAAATTAAGTTATGATGGCTTAGATCATTCTCAGAAGGACATGTTTTTGGACATTGCATGCTTCTTTAAAGGACGAGAAAGAGATTGGGTAACAAGAGTATTGGATGCTTTTGATTTCTTTGCAGCATCTGGGATAGAAGTCCTTTTAGATAAAGCTCTTATAACTATTTCAGAAGGCAATCACATAGAAATGCATGACTTGATACAGGAAATGGGTTGGGAAATTGTTCGTCAAGAATGTATCAAAGACCCTGGAAGACGAAGCCGATTGTGGAGACAAGAGGAAGTGCAAAATGTATTGAAATATAACAGGGGAACTGATGTTGTTGAAGGCATAATTTTATCTTTGCGGAAATTAACTGAAGCTCTACGTTTGAGCTTTGATTTCCTTGCAAAGATGACTAACCTGAGATTTCTTCAATTCTATGATGGTTGGGATGATTATGGTTCTAAAGTGCCAGTTCCTACTGGTTTTGAGTCATTGTCTGATAAATTGAGGTACCTTCATTGGGAAGGATTCTGCCTTGAGTCTTTGCCACTTAACTTTTGTGCTGAACAGCTTGTGGAGCTTTACATGCCTTTTAGCAAGCTTAAAAAGCTTTGGGATGGGGTTCAGAATCTTGTGAATTTAAAGATAATTGGCCTTCAGGGCTCCAAAGACTTGATTGAGGTCCCAGACTTATCCAAGGCAGAAAAACTGGAAATTGTTAATCTTTCTTTTTGTGTAAGCTTGCTTCAGCTCCATGTTTATTCAAAATCTCTCCAAGGACTTAATGCCAAAAACTGTTCATCTCTTAAGGAATTCTCAGTGACATCAGAGGAAATAACAGAATTGAACTTAGCTGACACAGCTATATGTGAATTGCCGCCATCAATTTGGCAAAAGAAGAAACTCGCTTTTCTTGTCCTAAACGGCTGTAAAAATCTTAAGTTTGTTGGGAACGAAATTGTTCACTTACTGTCTTCAAAAAGGTTAGACCTATCTCAAACTAATATTGAGAGGTTGCCTGCACTTCCACCATCCCTAAAATATTTGATGGCCGAGGGCTGCACTTCTCTGGAAACAAACTTCACTCAACATTTAGTGTTACACCACATGATACAAAGCCGCATACCCTACTTACACAAACATCCTAGTAACCCCGGGTATTATAATAACCATGAATGCTTCTTCTTCCCGGGGGACCGCATCACCAAAGCGTGTGGGTTTTGCACAGGAGATAGTTCAATAACTATTCCTTATCTTCCAAAATCTGACTTGCACGGTTTCATTTATTGCATCATTTTTTCTGAGGGAATTTACGGAAAGAGAAGCAGCGTACTTTCATGTTCTATCAATCAAGACGGTATACAGGTCGGCCAGGACCAGAAGACAATATATATCCCAGATTTATTTTTAGATCATGTGTTATTTTGGTATCATGACATCAGACAATTTGACAGAATAAGAGAAGTGTGTGATCATTTCAGCGACCTAACAATTTCATTTGAACATAAACACTTATTTCGTGGCGTGAAGATTACATGGGGCATAAAAGAGTGTGGGGTCTTCCCAGTATATGCCAGGGCATCAGGGTTTAAGGTGGTTGGTAGTAATAGCAAGGAAACTTTTGAATGTGAATCCATTACTCAAATCTCTAATAATGAGTCACAGCCCAGACCCAGAGCGATCAGAGTTGAAGCTGGAGTTAGAGGCTCTAATAATGAAAATGAAGAAGACAGGAACAACTTCCTGCAGCAAAAGAGGATGAGGACTTCACCATAA 2961 0.3904 MISAVASSSSSSSMLSPKKYDVFLSFRGEDTRRNFTSHLYEALKQKKVETYIDEHLEKGDEISPGLIKAIEDSHVSIVVFSKNYASSKWCLVELIKILDCKKDRGQIVIPVFYEIDPSDVRKQTGSYEQAFAKHEGEPSCNKWKTALTEAANLAGWDSRTYRTDPELLKDIVADVLQKLPPRYQNQRKGLVGIEEHCEHIESLLKIGPTEVRTLGIWGMGGIGKTALATTLYDKLSHEFEGSSFLSNVNEKSDKLENHCFGNSDMSTLRGKKALIVLDDVATSEHLEKLKVDYDFLEPGSRVIVTTRNREILGPNDEIYQVKELSSHHSVQLFCLTVFGEKQPKEGYEDLSERVLSYCKGIPLALKVMGASLRRKSKEAWESELRKLQKISSMEIHTVLKLSYDGLDHSQKDMFLDIACFFKGRERDWVTRVLDAFDFFAASGIEVLLDKALITISEGNHIEMHDLIQEMGWEIVRQECIKDPGRRSRLWRQEEVQNVLKYNRGTDVVEGIILSLRKLTEALRLSFDFLAKMTNLRFLQFYDGWDDYGSKVPVPTGFESLSDKLRYLHWEGFCLESLPLNFCAEQLVELYMPFSKLKKLWDGVQNLVNLKIIGLQGSKDLIEVPDLSKAEKLEIVNLSFCVSLLQLHVYSKSLQGLNAKNCSSLKEFSVTSEEITELNLADTAICELPPSIWQKKKLAFLVLNGCKNLKFVGNEIVHLLSSKRLDLSQTNIERLPALPPSLKYLMAEGCTSLETNFTQHLVLHHMIQSRIPYLHKHPSNPGYYNNHECFFFPGDRITKACGFCTGDSSITIPYLPKSDLHGFIYCIIFSEGIYGKRSSVLSCSINQDGIQVGQDQKTIYIPDLFLDHVLFWYHDIRQFDRIREVCDHFSDLTISFEHKHLFRGVKITWGIKECGVFPVYARASGFKVVGSNSKETFECESITQISNNESQPRPRAIRVEAGVRGSNNENEEDRNNFLQQKRMRTSP* 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0955 986 PRINTS Disease resistance protein signature 213 228 - -
Gso18g0955 986 PRINTS Disease resistance protein signature 358 372 - -
Gso18g0955 986 PRINTS Disease resistance protein signature 604 620 - -
Gso18g0955 986 Gene3D - 323 407 IPR042197 -
Gso18g0955 986 MobiDBLite consensus disorder prediction 944 986 - -
Gso18g0955 986 Pfam Leucine Rich Repeat 585 604 IPR011713 -
Gso18g0955 986 SUPERFAMILY L domain-like 520 770 - -
Gso18g0955 986 Gene3D Ribonuclease Inhibitor 499 671 IPR032675 -
Gso18g0955 986 Gene3D - 178 318 IPR027417 -
Gso18g0955 986 Gene3D Ribonuclease Inhibitor 672 788 IPR032675 -
Gso18g0955 986 Pfam TIR domain 19 191 IPR000157 GO:0007165
Gso18g0955 986 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 719 IPR044974 GO:0006952
Gso18g0955 986 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 719 948 IPR044974 GO:0006952
Gso18g0955 986 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 156 IPR035897 -
Gso18g0955 986 MobiDBLite consensus disorder prediction 964 978 - -
Gso18g0955 986 Gene3D - 17 177 IPR035897 -
Gso18g0955 986 ProSiteProfiles TIR domain profile. 18 179 IPR000157 GO:0007165
Gso18g0955 986 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 719 - -
Gso18g0955 986 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 719 948 - -
Gso18g0955 986 Pfam NB-ARC domain 265 397 IPR002182 GO:0043531
Gso18g0955 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 417 IPR027417 -
Gso18g0955 986 SMART till_3 19 153 IPR000157 GO:0007165
Gso18g0955 986 SUPERFAMILY "Winged helix" DNA-binding domain 394 500 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0955 Gso-Chr18 14546801 14551176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0955 16 746 WRKY Transcription Factor Family AT4G12020 31.509 1.56e-94 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0955 - - gmx:100809480 1964.12