Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0947 ATGATGAGTGTGATTCTCAGAAGATCCTCTTCCGTAATCTCGCGCCGCTTCTTCGCCGCTCTCGCCTCCGTCGAGCCGCTTCCTCGCAGGTTCCCCGCCGACAGGCACGGTGTATCCGGCGACGGAGCCCGGACCTTTCACGCGAATCCCGGACCGTTGAATTTCCGAGCTTCGCCGGTTCCTCGAGCGGCGCAGTTCGCCGTCGAGCGCGATTACTCCAACTACGAGGAAGTTAGCAGCGCGAACAGCGACGAAGGACTCGAGATCGCGAAGCTCGGGATCGCTCCGGAGATCGTGGATGCTCTTGCCAGGAAAGGGATCGCGAAGCTCTTTCCCATTCAGAGAGCTGTGCTGGAACCTGCGATGCAAGGGCGTGATATGATAGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGACAGGATCACTCAGTTTAATGCTAAGCATGGACAAGGAAGAAATCCTTTGGCTTTGGTTTTGGCTCCAACTAGAGAACTTGCGCGGCAGGTTGAGAAGGAATTCAATGAGGCTGCACCTAACTTGGCCACAATCTGTCTTTATGGGGGTATGCCCATCCAGCAACAAATGAGGCAGCTTAATTATGGCGTAGATATTGCAGTAGGCACGCCTGGTCGAATTATTGATCTTCTCAATAGGGGGGCACTGAATTTAAAGGATGTCAAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCTGTGGAGAAGATCCTGGAAGGGTTGTCTCCAAATCGTCAGACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAAGAATATTACCCGCAATTACCTGAACAACCCCTTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGTTGTACTCTATTGTGTCTGATTCGTACACTAAAGCAGGAATTCTTGCACCTCTGATAACAGAACATGCAAATGGAGGAAAGTGTATTGTTTTCACTCAAACGAAACGTGATGCTGATCGGTTATCATATGTCATGGCAAAAAGCCTTAGATGTGAGGCCTTGCATGGAGATATTTCACAAACTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAACAACAATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATTCCCAATGTTGATCTTGTAATACATTATGATCTTCCCAATTCATCAGAGATATTTGTTCATCGATCTGGACGAACTGGCCGTGCTGGGAAGAAAGGAAGTGCCATTCTTGTTTTCACACAAGACCAATTCAGGGCCTTGCAGACTATTGAGCGTGATGTTGGATGCAAATTTACAGAGCTACCAAAGATTGATGCTCCAAGTGGATCAGCAGAGATGTTTAGTGGCATGGCTGGTGGTCGATTTGGCTCTATGAGGGATCGTCAATCTGGAGGTACAGGTTTTGGTCGCAGTCCTGGATTTGGTCGTTCTGGGAGTTACGGTAACTCTGGATTTGGCCAATCTAGTTATGATGGCTTTGGTTCTGGTCAAGCTCCTCAATTTGGTGGAAATTCTCGCCCCGGTGGAAATTCTCGGCCCAGTGGTTTTGGTAGTTCAGGTCAATCTGGTGGTTTTGGAAATTTTGGGTCAGGTCAATCAGGTGGTTTTGGAAATTTTGGGTCAGGTCAATCTGGTGCATTTGGTGGCAGAAAGTCAAACCAAAGCAGCACCTTTGGTAATTCACATGGTAGTGGTTTCAGTGCTTTTGGGAATGACCCAAATAATGACAGTTACAATAGATGA 1812 0.4708 MMSVILRRSSSVISRRFFAALASVEPLPRRFPADRHGVSGDGARTFHANPGPLNFRASPVPRAAQFAVERDYSNYEEVSSANSDEGLEIAKLGIAPEIVDALARKGIAKLFPIQRAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDRITQFNAKHGQGRNPLALVLAPTRELARQVEKEFNEAAPNLATICLYGGMPIQQQMRQLNYGVDIAVGTPGRIIDLLNRGALNLKDVKFVVLDEADQMLQVGFQEAVEKILEGLSPNRQTLMFSATMPSWIKNITRNYLNNPLTIDLVGDSDQKLADGISLYSIVSDSYTKAGILAPLITEHANGGKCIVFTQTKRDADRLSYVMAKSLRCEALHGDISQTQRERTLAGFRNNNFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGSAILVFTQDQFRALQTIERDVGCKFTELPKIDAPSGSAEMFSGMAGGRFGSMRDRQSGGTGFGRSPGFGRSGSYGNSGFGQSSYDGFGSGQAPQFGGNSRPGGNSRPSGFGSSGQSGGFGNFGSGQSGGFGNFGSGQSGAFGGRKSNQSSTFGNSHGSGFSAFGNDPNNDSYNR* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0947 603 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 3 545 - -
Gso18g0947 603 MobiDBLite consensus disorder prediction 471 603 - -
Gso18g0947 603 CDD SF2_C_DEAD 306 435 - -
Gso18g0947 603 Gene3D - 313 470 IPR027417 -
Gso18g0947 603 SMART ultradead3 106 309 IPR014001 -
Gso18g0947 603 Gene3D - 88 296 IPR027417 -
Gso18g0947 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 292 IPR014001 -
Gso18g0947 603 PANTHER RNA HELICASE 3 545 - -
Gso18g0947 603 Pfam Helicase conserved C-terminal domain 321 426 IPR001650 -
Gso18g0947 603 MobiDBLite consensus disorder prediction 499 603 - -
Gso18g0947 603 Pfam DEAD/DEAH box helicase 111 280 IPR011545 GO:0003676|GO:0005524
Gso18g0947 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 321 465 IPR001650 -
Gso18g0947 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 447 IPR027417 -
Gso18g0947 603 CDD DEADc 98 293 - -
Gso18g0947 603 SMART helicmild6 346 426 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0947 Gso-Chr18 14276992 14284035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0947 92 458 Eukaryotic Initiation Factors Gene Family AT3G19760 33.154 2.77e-65 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0947 - - gmx:100802553 1064.29