Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0942 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATTCCTGTGTCACCACCACCAATCAAAAGAAGCCCATGATAGGGGTGGACCAAGAGCTTGTAGAGCTTCAGTGGCAAAATGGCCAGGTAGTGATGCACAGCCAAACACACAGAAAACCGTTTGTGAATTCCATCACGCCGAGACCGCTTCGGAGGAATTTTCAATCAACATTAAGGACTAGTGAGCCATTTGGGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAGTTCTGTTCAAACCTTTTATCTGAACTGGCACCTTGTGAAGTTGAGTCCTATAAGCAAATCAAGCCATTTGAAGAGGGGAAGTTTACCAAATTGGATGCCTCTAGTACCCCCCATGTGACTGAAACTTCGCAATCACCTACCATGAAATCTTCCTCTTTTCAGGAATTCTCAGGAATTCCTATACCTGCTCCAAGATTCCATGTTTCTGATTCACCTCAGAAAAACAATAATGACTTGGGTGGATCATGTAAGGTCCAAAACTTCTCTCACTTTTCAGCACCTCTTAATGTTTCTTCAGCATCGGCTAACGCGCATTTTAGGGACAAAATTACTGGTAACATGTCAAAAAATGAGATTAGAGAGTGCTCATTGATGACAGTTGGATCAAGTTACTGTGGTAGCAATCACATCCCCCAAGATCCAGATGCAAGCAGGGCATCAAGCAATGGTGTCTGGACTACTACTTTATCCGCCGAGCCTGAAGCTGTTAGAGACCATGTGCCGAGAACAAGTCCTCAGAATGAAAAAGGGAAATCGGAGATGCTTGAACCAACTACAACTTCATCATCCGGTGGCTCAGGTAGTAGTCTTGGAAAAAATTGTTCGCTATCTACGAGAAACCAGGGCCAAAAAAGAAAAGGAATAGATGTGGAAGAATCTGAGGAGCAAAGTGAGGACACAGAACTTAAATCAGCACTTGGAAACAAGTCATCTCAACGTGCAGGGTTGGCTCGAAGGAACCGCGCTGCTGAAGTGCATAATCTATCTGAAAGGAGAAGGAGAGACCGGATCAATGAGAAGATGAAGGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTGGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTACAACTTCAGCTAATGTGGATGGGATCTGGCATGGCACCAATTATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGTATGGGAATGGCTACACCGCCTTTCCCTCCTATTCACAATCCGATGCAATTACCGAGACTGCCGCTTGATCAGTCTGTATCTGCGTCTCAGACACCAAACCAGACATTAATGAGCCAAAATCCTATTTTGGGTGCCTTTAATTACCACAATCAGATGCAAAATCCAGCTCTTTCAGAGCAATATGCGCGTTACATGGGCTATCATCTTATGCAAAATGCCTCTCAGCCAATGAATGTATTCAGATATGGTCCCCAGGGGGTACGGCATAGTCAAACAATGATTACACCCAGCAACAGCAGTGGAAACATGAGTGGAGCAGCAAATATTGATGAGGCTGTGAGTGGCAAAATGGGTTAA 1644 0.4392 MNNSVPDWNFGSDSCVTTTNQKKPMIGVDQELVELQWQNGQVVMHSQTHRKPFVNSITPRPLRRNFQSTLRTSEPFGNSSNLIQDDETVSWIQYPLEDPLEQEFCSNLLSELAPCEVESYKQIKPFEEGKFTKLDASSTPHVTETSQSPTMKSSSFQEFSGIPIPAPRFHVSDSPQKNNNDLGGSCKVQNFSHFSAPLNVSSASANAHFRDKITGNMSKNEIRECSLMTVGSSYCGSNHIPQDPDASRASSNGVWTTTLSAEPEAVRDHVPRTSPQNEKGKSEMLEPTTTSSSGGSGSSLGKNCSLSTRNQGQKRKGIDVEESEEQSEDTELKSALGNKSSQRAGLARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPIMFPGIQHYMSQMGMGMATPPFPPIHNPMQLPRLPLDQSVSASQTPNQTLMSQNPILGAFNYHNQMQNPALSEQYARYMGYHLMQNASQPMNVFRYGPQGVRHSQTMITPSNSSGNMSGAANIDEAVSGKMG* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0942 547 SMART finulus 357 406 IPR011598 GO:0046983
Gso18g0942 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 351 400 IPR011598 GO:0046983
Gso18g0942 547 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 412 IPR036638 GO:0046983
Gso18g0942 547 MobiDBLite consensus disorder prediction 524 547 - -
Gso18g0942 547 PANTHER TRANSCRIPTION FACTOR PIF5 1 529 - -
Gso18g0942 547 MobiDBLite consensus disorder prediction 137 157 - -
Gso18g0942 547 Pfam Helix-loop-helix DNA-binding domain 355 401 IPR011598 GO:0046983
Gso18g0942 547 Gene3D - 347 407 IPR036638 GO:0046983
Gso18g0942 547 Coils Coil 357 377 - -
Gso18g0942 547 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 529 IPR031066 -
Gso18g0942 547 MobiDBLite consensus disorder prediction 277 313 - -
Gso18g0942 547 CDD bHLH_AtPIF_like 351 414 - -
Gso18g0942 547 MobiDBLite consensus disorder prediction 260 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0942 Gso-Chr18 14101022 14105305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0942 226 547 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 39.769 1.28e-44 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso18g0942 HLH 1.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0942 K16189 - gmx:100784531 1062.75