Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0940 ATGGCTTCTTCACTTGGTCGAAAAAGAACCCACGCTCCCAAAGGATCCTCCGCCCTTAACGACGACGTTTCCTGCGAGGTATGCAGCGGTGGCCACTCCCCTTCCAAGCTTATTCTCTGCGACAAATGCGACCGTGGTTACCACCTCTTCTGCCTCCGTCCAATTCTTCCCTATGTCCCCAAAGGCTCTTGGTTCTGCCCCTCTTGCTCCAATCACAAACCCAAGTCTTTCCCCCTTGTCCAGACCAAAATCATCGACTTCTTTCGAATCCAACGCTCCCCCGAGGCATTATCAAATCAAGACACGCGGAGGAAGCGAAAGCAGGGTGGGGGCTTGGTGGTAACGAAGAAGAAGGGGAAGCTGGCGTCTTTAGTTTTTTTTTTTTTTAATAATTTTTAA 399 0.5013 MASSLGRKRTHAPKGSSALNDDVSCEVCSGGHSPSKLILCDKCDRGYHLFCLRPILPYVPKGSWFCPSCSNHKPKSFPLVQTKIIDFFRIQRSPEALSNQDTRRKRKQGGGLVVTKKKGKLASLVFFFFNNF* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0940 132 Pfam PHD-finger 25 71 IPR019787 -
Gso18g0940 132 ProSiteProfiles Zinc finger PHD-type profile. 22 72 IPR019787 -
Gso18g0940 132 SMART PHD_3 24 70 IPR001965 -
Gso18g0940 132 ProSitePatterns Zinc finger PHD-type signature. 25 69 IPR019786 -
Gso18g0940 132 CDD PHD_RSF1 25 69 - -
Gso18g0940 132 PANTHER HISTONE ACETYLTRANSFERASE 14 121 - -
Gso18g0940 132 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 14 121 - -
Gso18g0940 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 85 IPR013083 -
Gso18g0940 132 SUPERFAMILY FYVE/PHD zinc finger 17 76 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0940 Gso-Chr18 14089809 14090846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0940 21 69 C2H2 Transcription Factor Family AT3G01460 44.898 8.51e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Gso18g0940 PHD 1.5e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0940 K24406 - gmx:102669791 271.937