Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0925 ATGATGCTTACCTTGCTTAAGCAAAGATCTCTGATTTCAACACTAGCCCCTTCTTTTCCATTCATCACCACCCGAACCCATTTCTCTTCTTTACTGCAACAACAACAACAACAACACAAACCATCCATTTTCCTCAACCCCTTTTCTTCCAAATCCAAATCCAAATCCCAAACCAAAAATCCTAACTTCACCCTCTCCTACCTCATCAACACCTGCAACCTGTCCCCCGCGTGGGCCCTCAAGCTCTCTAAAAGGGTCCACCTCAAATCCCCCGATCAGCCTAACGCCGTCCTTAACCTCCTCAAAACCTTCGGATTCTCCGAACTCCAGTTGTCCCTCCTTGTCAAACGCTTCCCCATAGTCCTCAAGATCAAACCCGAAAAGACCATTCTGCCCAAGCTCCAGTTCTTCCTCTCCATCGGCCTCTCCACCTCCGACCTCCCCAAACTCCTCATCGGAAACTCCGTCCTCTTGGAAGGCAGCCTCAAGTACTGCCTTGTTCCGCGCTACAACATCCTCAGCACTGTCCTCAGAGACAGAGACAAGGTTGTTTTGGCCTTAAAACGTGTTCCCTGGTGCCTCACCGGCCGTGGCTTGATCAACCATTTGATCCCCAACGTGGAGCACCTAAGAGGTGTAGGGGTGCCGCAGGGCCCCATTGCCCACCTGGTGTGCAACCACCTCGGTGTGGTGTGTGTGGAGCACACGAAATTCGTGGAGGCTGTGGAGAAGGTGGTGAAATTCGGGTTTGATCCGATGAAAACCATGTTTGTGGAGGCGGTGAAGGTGGTGGTTGGGACTAGCAAGGAGGCTTGGGAGAAGAGGGTGGAGGTTTATGAGAGGTGGGGTTGGTCTAATGAGATGTGTCTTTGTGCCTTCAGGAGGTACCCTCAGTGTATGTTGATGTCGGAGGATAAGGTCATGAGGACCATGAGGTTTTTGGTTAAGGATATGGGGTGGCCTGCAGAGGATATTTTTCGGACTCCGGGGGTTCTCAGCCCCAACTTGGAGAAGACAATTATGCCGCGGTCTCGCGTTATGAAGGTGTTGAAGGAGAGGGGGCTGGTGAAGAGTGACTCACGGCTTAGCTCGGCTATTTTGATCACCGAGAAGTTGTTTTTGGAGAAGTTTGTGGGGCGGTTCCAGGATCGTGTACCGGGGCTTATGGAGGTGTATAAAGGGCACGTTGATCACCTGGATTCGGTGCTGTAG 1212 0.5173 MMLTLLKQRSLISTLAPSFPFITTRTHFSSLLQQQQQQHKPSIFLNPFSSKSKSKSQTKNPNFTLSYLINTCNLSPAWALKLSKRVHLKSPDQPNAVLNLLKTFGFSELQLSLLVKRFPIVLKIKPEKTILPKLQFFLSIGLSTSDLPKLLIGNSVLLEGSLKYCLVPRYNILSTVLRDRDKVVLALKRVPWCLTGRGLINHLIPNVEHLRGVGVPQGPIAHLVCNHLGVVCVEHTKFVEAVEKVVKFGFDPMKTMFVEAVKVVVGTSKEAWEKRVEVYERWGWSNEMCLCAFRRYPQCMLMSEDKVMRTMRFLVKDMGWPAEDIFRTPGVLSPNLEKTIMPRSRVMKVLKERGLVKSDSRLSSAILITEKLFLEKFVGRFQDRVPGLMEVYKGHVDHLDSVL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0925 403 SMART mt_12 290 321 IPR003690 GO:0003690|GO:0006355
Gso18g0925 403 SMART mt_12 112 143 IPR003690 GO:0003690|GO:0006355
Gso18g0925 403 SMART mt_12 184 216 IPR003690 GO:0003690|GO:0006355
Gso18g0925 403 SMART mt_12 322 356 IPR003690 GO:0003690|GO:0006355
Gso18g0925 403 SMART mt_12 255 285 IPR003690 GO:0003690|GO:0006355
Gso18g0925 403 PANTHER CGI-12 PROTEIN-RELATED 31 396 IPR003690 GO:0003690|GO:0006355
Gso18g0925 403 Pfam mTERF 98 287 IPR003690 GO:0003690|GO:0006355
Gso18g0925 403 Pfam mTERF 260 373 IPR003690 GO:0003690|GO:0006355
Gso18g0925 403 Gene3D Transcription termination factor 3, mitochondrial 200 383 IPR038538 -
Gso18g0925 403 Gene3D Transcription termination factor 3, mitochondrial 76 199 IPR038538 -
Gso18g0925 403 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 31 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0925 Gso-Chr18 13422945 13426769 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gso18g0925 mTERF 3.6e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0925 K15032 - gmx:100778090 769.615