Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0917 ATGATGTCTAATTTTCTCCTCATTGCAAGATTAACTGCGTCATCATCATTCACACGCTACAAGAGCACCCATATCCCATTGGGTTCTCTGTTGCAACACAAACACACAGCTTCACTTTTTTTCTTCAATTCATTCACTTCAGCTACCTCTTCTGATTCTGAATCAGATGGAAACCACCATAAAGGTGACACCTTTACTGTGTCGTACCTCATCAACTCATGTGGGGTGTCCCCAACACTGGCTAGGGAACTCTCCAACAGGGTCAATTTAAAAAACCCTAATGGCCCAAATGCTGTTCTTGATCTTCTCAACAACTATGGGTTCTCCAAAACACAGCTTGCAAAACTTGTGGTGAGACATCCTTTAGTGCTTGTTGCAAAAGCAAAGAAAACCCTTTTGCCTAAACTCAAGTTCTTTCGTTCTATTGGGGTCTCCGACACTGACATGCCAAAAATCCTGATTGCTAATCATTGTATCTTGGAGAGGAGCTTGGAAAAATGCCTCATCCCACGTTATGAGTTCCTAAAGAGTGTACTTTGTGATGATCGGGAAGTTGTTAGAGCTTTGAAAAGTTCCCCTCTTGGTTTTGTATATGGTGACTTAGTGAATGCCTTGGTTCCAAACATTAAAATTTTGAGGCAATCTGGTGTGTCTCAGGCATCCATCTCTTTCCTACTGACCATTGCTCTGCCTGCAGCATATGTGGAGCATTCCAGATTTGTGGAAGCTGTGAAGACAGTTAAGGAAATTGGGTTTAGTCCTTTGAAAACAAATTTTGTCGTGGCTATTTCCGTGCTTACAACTATGAGGAAAACAGTCTGGAATTCAAGGTTTGAGGTTTATGAGAGTTGGGGCTGGAACCGTGAAATGGCTCTTCGAGCATTTAGAAAGTTTCCTGGTTTTATGAAGTTTTCAGGGGAGACGTTTACCAAAAAAATGAGTTTCCTGGTGAAGGATATGGGTTGGCCATCTGAAGCTATTGCTGAATATCCTCAAGTTGTAGCATACAGCTTGGAGAAGAGAATTATCCCTAGATTCTCTGTTATCAAAATCTTGAAATCAAAAGGTCTGCTTGAGAAAAACATGCACTTTAGTTCCATTATTTGCACAGCTGAGGAAAAGTTTTTGGAGAAATTTGTCGTCAATTTTCAGAAAATTTTGCCTTTCTTACCAGATGTTTACAGAGGTTTGATCAATCCTTCAAATGTATTGTAG 1215 0.4049 MMSNFLLIARLTASSSFTRYKSTHIPLGSLLQHKHTASLFFFNSFTSATSSDSESDGNHHKGDTFTVSYLINSCGVSPTLARELSNRVNLKNPNGPNAVLDLLNNYGFSKTQLAKLVVRHPLVLVAKAKKTLLPKLKFFRSIGVSDTDMPKILIANHCILERSLEKCLIPRYEFLKSVLCDDREVVRALKSSPLGFVYGDLVNALVPNIKILRQSGVSQASISFLLTIALPAAYVEHSRFVEAVKTVKEIGFSPLKTNFVVAISVLTTMRKTVWNSRFEVYESWGWNREMALRAFRKFPGFMKFSGETFTKKMSFLVKDMGWPSEAIAEYPQVVAYSLEKRIIPRFSVIKILKSKGLLEKNMHFSSIICTAEEKFLEKFVVNFQKILPFLPDVYRGLINPSNVL* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0917 404 Pfam mTERF 275 375 IPR003690 GO:0003690|GO:0006355
Gso18g0917 404 Pfam mTERF 100 305 IPR003690 GO:0003690|GO:0006355
Gso18g0917 404 PANTHER CGI-12 PROTEIN-RELATED 35 397 IPR003690 GO:0003690|GO:0006355
Gso18g0917 404 Gene3D Transcription termination factor 3, mitochondrial 155 387 IPR038538 -
Gso18g0917 404 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 35 397 - -
Gso18g0917 404 SMART mt_12 292 323 IPR003690 GO:0003690|GO:0006355
Gso18g0917 404 SMART mt_12 114 145 IPR003690 GO:0003690|GO:0006355
Gso18g0917 404 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Gso18g0917 404 SMART mt_12 324 358 IPR003690 GO:0003690|GO:0006355
Gso18g0917 404 SMART mt_12 257 287 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0917 Gso-Chr18 13345089 13346622 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gso18g0917 mTERF 5.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0917 K15032 - gmx:100786641 759.599