Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0916 ATGGTTACTAATTTTCTCATTGTAAGGTTGACTGCATCTTTCACACACCACAGAAGCACCCCTATCCAATTGGGTTCTCTGCTGCAACACAAACACAATGCTTTCCTTCTTTTCTTCAGTTCATTCACTTCAGGAACCTCTTCTGATTCTGAATTAGATGGAAACCAACACAAAGGTGACAACTTTACCGTGCCATACCTCATCAACTCATGTGGGGTGTCCCCAAAACTTGCTAGGAAACTCTCCAAAAAGGTCAATTTGAAAACCCCAAATGGCCCAAATTCTGTTCTGGATCTTCTCAACAACTACGGGTTTGACAAAACCCATCTTGCAAAGCTTGTAGAGAAACATCCCATGGTGCTTGTTGCTAACGCAGAGAACACCCTTTTGCCTAAACTCAAGTTTTTCCGTTCTATTGGGGTTTCCAACACTGACATGCCTAAGATCCTACTTTGTAACCATGTATTATTGGTGAGTAGCTTGGAAAATTACCTCATCCCACGTTACGAGATCCTAAGGAGTGTACTTCGTGACGATCAGGAAGTTGTTAGAGCTTTGAAAAACGCCCCATTTGGTTTTACGTATGGTAGCTTTATAAACAGCTTGGTTCCAAACATCAAGGTTTTGAGGCAATCTGGTGTGCCCCAAGCTTCCGTGTCTTACCTGATGATCCACTCTGGGGCTGTAGTCTACTCCAAACATTCAAGATTTGTGGAGGCTGTCAACACTGCTAAGGAAATTGGGTTTAATCCTTTGAGAATAAGTTTTATTAATGCTATTGAAATGCATCTAAGTAGGAGCAAAGCAGTGCGAGAATCAAGGTTTGAGGTTTATGAGAAGTGGGGTTGGAATGGCGAAATGGCTCTTCAAGTATTTCGAAAGTTTCCCTATGTTATGAAGTTGCCCGAGGAGACATTTACCAAAAAAATGAGTTTCCTAGTGAAAGATATGGGTTGGTTATCAGAAGATATTGCTGAATATCCTCAGGTGTTAGCGTACAACTTGGAGAAGAGGATTATCCCTAGATTCTCGGTAATCAAAATATTGAAATCAAAAGGTCTGCTTGAGAAAAATGTGCATTTCAGTAAAATTATTTGCGTAACTGAGAAATTATTTTTGGAGAAATTTGTCATCAATTATCAGAAAGATTTGCCTTTCTTGCCAGATTTCTACAACAGTTTGACTAATCAACGGAATGTAGTATAG 1206 0.3997 MVTNFLIVRLTASFTHHRSTPIQLGSLLQHKHNAFLLFFSSFTSGTSSDSELDGNQHKGDNFTVPYLINSCGVSPKLARKLSKKVNLKTPNGPNSVLDLLNNYGFDKTHLAKLVEKHPMVLVANAENTLLPKLKFFRSIGVSNTDMPKILLCNHVLLVSSLENYLIPRYEILRSVLRDDQEVVRALKNAPFGFTYGSFINSLVPNIKVLRQSGVPQASVSYLMIHSGAVVYSKHSRFVEAVNTAKEIGFNPLRISFINAIEMHLSRSKAVRESRFEVYEKWGWNGEMALQVFRKFPYVMKLPEETFTKKMSFLVKDMGWLSEDIAEYPQVLAYNLEKRIIPRFSVIKILKSKGLLEKNVHFSKIICVTEKLFLEKFVINYQKDLPFLPDFYNSLTNQRNVV* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0916 401 Pfam mTERF 97 301 IPR003690 GO:0003690|GO:0006355
Gso18g0916 401 Pfam mTERF 268 372 IPR003690 GO:0003690|GO:0006355
Gso18g0916 401 PANTHER CGI-12 PROTEIN-RELATED 29 393 IPR003690 GO:0003690|GO:0006355
Gso18g0916 401 Gene3D Transcription termination factor 3, mitochondrial 177 384 IPR038538 -
Gso18g0916 401 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 29 393 - -
Gso18g0916 401 SMART mt_12 111 142 IPR003690 GO:0003690|GO:0006355
Gso18g0916 401 SMART mt_12 147 178 IPR003690 GO:0003690|GO:0006355
Gso18g0916 401 SMART mt_12 289 320 IPR003690 GO:0003690|GO:0006355
Gso18g0916 401 SMART mt_12 321 355 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0916 Gso-Chr18 13336759 13338505 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gso18g0916 mTERF 1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0916 K15032 - gmx:100777030 781.556