Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0880 ATGTCAGCAAACAGTTCTTTGCATGTGGAATTATCGAGGAAGACTTCGTTTTTGGGATTGAGATTATGGGTTTTGATTGGGATAGGTGTTGGTGTTTTTATAGTTGTGATTCTTTGTGTATTATCTGTATGGGTGATGTTTCGGAGAAAGTCTAAAAGATCTCTGGACAAGTACTCTTTGTCACAAATACCACATGTCTCAAAGGACATCATAGTTGACATGGTTGGGGTGCAGATATCTCATGATCAATCAGAAAGTGTAGCTATTCCTGTTCATGACAAACCAAGTGAGAACAACTCGAACAAGTTGTTTTCTCATTTGCACAAGAGCAAATCTGGCGACGCCGATAATATCAGTCAGTGCAGCTCGGTTTATCATCACGAGAGAGGATTTAGTTCAATGTCGGGGGAAGAAGGAAGCTCCGGGACTGTTAAGAAGCAGTCTGCATTGTCATTTGGAGGAATGGTAACGGCATCTCCTCTAGTTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGCCACTGGTTCACACTTAGAGATCTGGAACTTGCTACTAATCGCTTCTCACCAGAGAATGTGATTGGCGAGGGTGGATATGGGGTTGTTTACAGGGGAAAATTGATCAATGGATCCGAGGTGGCAGTGAAGAAAATTCTTAACAACTTGGGACAAGCTGAGAAAGAATTCAGGGTGGAAGTAGAGGCTATTGGCCATGTCAGACATAAAAATCTTGTGCGCTTACTTGGTTATTGCGTAGAAGGAGTTCACAGGTTGCTGGTGTATGAATATGTAAACAATGGTAACTTAGAACAATGGCTACATGGGGCTATGAGCCAACAAGGGACACTTACCTGGGAAGCTCGAATGAAAGTTATAACTGGAACAGCCAAAGCGCTAGCTTACTTACATGAAGCAATAGAACCGAAAGTTGTTCACCGGGATATAAAGTCTAGCAACATATTGATTGATACTGAGTTCAATGCAAAGGTTTCTGACTTTGGTTTGGCCAAACTTTTGGATTCAGGAGAAAGTCACATTACTACTAGAGTAATGGGAACATTTGGTTATGTGGCACCGGAATATGCTAATACAGGTTTGTTAAATGAGAGGAGTGACATTTACAGCTTTGGTGTTCTCCTGCTAGAAGCAGTTACTGGAAAGGATCCTGTAGACTACTCACGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGGAGGGCTGAGGAAGTTGTGGACTCAAGGCTTGAAGTGAAACCATCAATACGTGCTTTAAAGCGTGCTCTTCTAGTTGCTCTTAGATGTGTTGATCCCGAAGCAGAAAAGAGGCCCAAAATGAGTCAAGTTGTGAGGATGCTTGAAGCTGACGAATATCCATTCCGAGAGGATCGAAGAAATAGAAAGAGCCGCACTGCAAGTATGGAAATTGAATCTCTGAAGGATATTTCTGGTCCATCTGATGCTGAAAAGTTGAAGGGGGGTTCTGAAGGCCATGAACCAGAGACAACTCAAGGGTAG 1536 0.4297 MSANSSLHVELSRKTSFLGLRLWVLIGIGVGVFIVVILCVLSVWVMFRRKSKRSLDKYSLSQIPHVSKDIIVDMVGVQISHDQSESVAIPVHDKPSENNSNKLFSHLHKSKSGDADNISQCSSVYHHERGFSSMSGEEGSSGTVKKQSALSFGGMVTASPLVGLPEISHLGWGHWFTLRDLELATNRFSPENVIGEGGYGVVYRGKLINGSEVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGAMSQQGTLTWEARMKVITGTAKALAYLHEAIEPKVVHRDIKSSNILIDTEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNERSDIYSFGVLLLEAVTGKDPVDYSRPANEVNLVEWLKMMVGTRRAEEVVDSRLEVKPSIRALKRALLVALRCVDPEAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDISGPSDAEKLKGGSEGHEPETTQG* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0880 511 MobiDBLite consensus disorder prediction 466 481 - -
Gso18g0880 511 MobiDBLite consensus disorder prediction 466 511 - -
Gso18g0880 511 ProSitePatterns Protein kinases ATP-binding region signature. 194 217 IPR017441 GO:0005524
Gso18g0880 511 SUPERFAMILY Protein kinase-like (PK-like) 172 461 IPR011009 -
Gso18g0880 511 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
Gso18g0880 511 Gene3D Phosphorylase Kinase; domain 1 169 263 - -
Gso18g0880 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Gso18g0880 511 Pfam Protein kinase domain 191 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0880 511 MobiDBLite consensus disorder prediction 488 503 - -
Gso18g0880 511 PANTHER OS01G0323000 PROTEIN 2 507 - -
Gso18g0880 511 PANTHER RECEPTOR-LIKE KINASE PLANT 2 507 - -
Gso18g0880 511 CDD STKc_IRAK 194 460 - -
Gso18g0880 511 SMART serkin_6 188 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0880 511 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0880 Gso-Chr18 12149375 12154644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0880 19 462 Trihelix Transcription Factor Family AT1G70460 39.778 1.08e-95 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Gso18g0880 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0880 - - gmx:100813931 963.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0880 18 12149375 12154644 Gso8g2563 8 43079095 43084324 GST
Gso18g0880 18 12149375 12154644 Gso14g0249 14 2187583 2193044 PCT
Gso14g0249 14 2187583 2193044 Gso18g0880 18 12149375 12154644 PCT
Gso14g1605 14 48049549 48053328 Gso18g0880 18 12149375 12154644 PCT
Gso2g1907 2 43332319 43336485 Gso18g0880 18 12149375 12154644 PCT