Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0879 ATGTTGCCTCATTTTCTCATTACAAGATTAACTTCATCCTTCACACACTACAAGAGCACCCAAATCCCATTGGGTTCTCTGCTGCAACACAGACACTATGTTTTTCTTTTTTCCTTCAATTCATTCACATCTGGTAGAGACAACCATAAAGGTGTCACCTTTACCGTATCTTACCTCATAAACTCATGTGGGTTGTCCCCAGAACTGGCTTACAAACTCTCCAACGGGGTCAGTTTAAAAACCCCCAATGGCCCAAATGCTGTTCTTGACACTCTCAAGGACTATGGATTCTCCAAAACTGAGGTTGCAAAACTTGTGGAGAAGCATCCCAGGGTGCTTGTTGCAAATGCAGAGAAGACCCTTTTGCCTAAACTGCAGTTCTTCCACTCTATTGGGGTTTCCAACACTGACATGTCTAAGATGATAATTAAAAACCCCTTAATCTTGCGGAGGAGCCTGGCAAAATTCCTTGTCCCTCTATGCAGGATGATCAGGCGTGTGGTTCATGATGATCTGGAAGTTGTTAAAGTTTTGAGAAAATCCCCATTTGCTTTCACATATGCTGACATGGTGAATGGCTTGGTTCCAAACATTGAGGTTTTGAGGCAGTCTGGTGTGCCTCAAGGTTCGATCTCTCTGCTGATGGTCCATTTTCCCAGTGTAGCATATGGGAAGCATTCCAGATTTGTGGAAGCTGTCAAGAGAGTTAAGAAATTTGGGTTTGATCCTTTGAAAACAGCATTTGTCATGGCTATCCAAGTGCTTTATAATATGCGAAAACTGGCATTGGAATTGAGATTTGAGATTTATGAGAGGTGGGGCTGGAACCGGGAAATGGCTCTTCAAGCGTTTGTGAAGTATCCCAATTTTATCAAGTTGTCTGATGAGATGGTTACAAAGAAAATGAATTTCCTAGTGAAAGACATGGGTTTGTCACCAGAATATATTGCTGCATATCCTACTGTTCTAGGCTACAACTTGGAGAAGAGGATTGTCCCTAGACTCTCAGTAATTAAAATCTTGAAATCAAAAGGTTTGGTTAAGAATAATTTGCAAAGTAGTTCCTTTTTGTGCATTACTGAGGAAATTTTTTTGAAGAAATTTGTCATTAATTTCCAGGAAGATTTGCCTCTCTTACCAGATGTCTACAAAGTCAAATCAAATTGCACTTGGTGCTACCATTAG 1185 0.4068 MLPHFLITRLTSSFTHYKSTQIPLGSLLQHRHYVFLFSFNSFTSGRDNHKGVTFTVSYLINSCGLSPELAYKLSNGVSLKTPNGPNAVLDTLKDYGFSKTEVAKLVEKHPRVLVANAEKTLLPKLQFFHSIGVSNTDMSKMIIKNPLILRRSLAKFLVPLCRMIRRVVHDDLEVVKVLRKSPFAFTYADMVNGLVPNIEVLRQSGVPQGSISLLMVHFPSVAYGKHSRFVEAVKRVKKFGFDPLKTAFVMAIQVLYNMRKLALELRFEIYERWGWNREMALQAFVKYPNFIKLSDEMVTKKMNFLVKDMGLSPEYIAAYPTVLGYNLEKRIVPRLSVIKILKSKGLVKNNLQSSSFLCITEEIFLKKFVINFQEDLPLLPDVYKVKSNCTWCYH* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0879 394 SMART mt_12 281 312 IPR003690 GO:0003690|GO:0006355
Gso18g0879 394 SMART mt_12 103 134 IPR003690 GO:0003690|GO:0006355
Gso18g0879 394 SMART mt_12 175 207 IPR003690 GO:0003690|GO:0006355
Gso18g0879 394 SMART mt_12 139 171 IPR003690 GO:0003690|GO:0006355
Gso18g0879 394 SMART mt_12 313 347 IPR003690 GO:0003690|GO:0006355
Gso18g0879 394 Gene3D Transcription termination factor 3, mitochondrial 157 375 IPR038538 -
Gso18g0879 394 PANTHER CGI-12 PROTEIN-RELATED 25 386 IPR003690 GO:0003690|GO:0006355
Gso18g0879 394 Pfam mTERF 89 301 IPR003690 GO:0003690|GO:0006355
Gso18g0879 394 Pfam mTERF 285 364 IPR003690 GO:0003690|GO:0006355
Gso18g0879 394 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 25 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0879 Gso-Chr18 12111073 12113230 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Gso18g0879 mTERF 8.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0879 K15032 - gmx:100813396 786.949