Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0872 ATGGACAAGCATTCTGGGAATTCTTCATCAGCTCATGCTGCTGCAGGTCCATCTGGGATTTCCCCACATAATGTTCCAAAAAAAGCGGGAAGCAGTGCATGGGGAATACCACGTGCCAGTGATGTGTTCCATGACTCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAATTAGATTTGACTGATTCGGAAAATTATGGTCAACCAGTTGATGATAACTTGCTAACATTAGATAAAGTTCACAAAGAGGATGAGGGACACGATCCTTTTGATGACTTTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGAGGACCTTTTAGCTGGCATTATGGATGATTTTGACCTCAGTAAATTGCCCAGTCAACTGGAGGATTTGGATGAAAATGATCTGTTTGTCAATGGAGGGGGATTTGAGATGGATTTTGAACCCCAAGAGAGCCTCAATATCAGTATGTCCAAGATAGGCATATCAGATGGAATTGCTTCAAATGGTATTGGTCAGTATGCAATCCCAAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTATTTGAGCAATATGGGGATATCAGAACTTTATACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGATATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAAGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCAAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAAGAGATCAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGACATCAAGTAGTTTCACCTGTGGCCAATTCTCCTCCTGGTAGCTGGGCACAATTTGGTAGTCCAGTTGAACAAAATCCATTAGCTTCTTTTAGCAAGTCCCCTGGTTTGGGCCCTGCCAGTCCCATTAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACATGCAACAACCTCTACCAAGATTGCACCGATTGGCAAGGACCCTGGAAGGGCTGCAAATCAGATGTTTTCTAACTCTGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATATCCTTTCCTGAGCAAAATGTAAAGGCAAGTCCTAGGCCTATATCTACTTTTGGTGAATCAAGTTCTAGTGCATCAAGTATTGGAACACTGTCCGGTCCTCAATTTCTTTGGGGAAGCCCAACTCCTTACTCTGAGCATTCAAACACTCCTGCCTGGTCTTCATCTTCGGTGGGGCTTCCATTTACATCTAGTGTCCAAAGGCAGGGTTTCCCATATACTAGTAATCACAGTCCTTTTCTTGGCTCCCACTCTCATCATCATGTTGGATCTGCTCCATCTGGCCTTCCGCTTGATAGGCATTTTAGCTACTTCCCTGAGTCACCTGAAGCTTCTCTCATGAGCCCGGTTGCATTTGGGAATTTAAATCACGGTGATGGGAATTTTATGATGAACAACATTAGTGCTCGTGCATCTGTAGGAGCCAGTGTTGGTCTTTCTGGAAATACCCCTGAAATTAGTTCACCCAATTTCAGAATGATGTCTCTGCCTAGACATGGTTCCTTGTTCCATGGAAATAGTTTGTATTCTGGACCTGGAGCAACTAACATTGAGGGATTAGCTGAACGTGGACGAAGTAGACGACCTGAAAATGGTGGGAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCGTCTGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTATACGTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTACTTATGACTTCCTCTACTTGCCAATTGACTTCAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCGCCTTCTACAAGGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCGCTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATTTGCATTCGCCAACCAGATGGATCCTATTCAAGTGATTTGTTGGAGAGCCCAAAGGGCAATTTGGATCAGAAGCTAGAGAAAGATTAA 2574 0.4242 MDKHSGNSSSAHAAAGPSGISPHNVPKKAGSSAWGIPRASDVFHDSSDVSLFSSSLPVLPHEKLDLTDSENYGQPVDDNLLTLDKVHKEDEGHDPFDDFETNAIGNMLPDDEEDLLAGIMDDFDLSKLPSQLEDLDENDLFVNGGGFEMDFEPQESLNISMSKIGISDGIASNGIGQYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVVSPVANSPPGSWAQFGSPVEQNPLASFSKSPGLGPASPINTNHLSGLAAILSPHATTSTKIAPIGKDPGRAANQMFSNSGSTQGAAFQHSISFPEQNVKASPRPISTFGESSSSASSIGTLSGPQFLWGSPTPYSEHSNTPAWSSSSVGLPFTSSVQRQGFPYTSNHSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVAFGNLNHGDGNFMMNNISARASVGASVGLSGNTPEISSPNFRMMSLPRHGSLFHGNSLYSGPGATNIEGLAERGRSRRPENGGNQIDSKKLYQLDLDKIVCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGDQEHFLSSNLNICIRQPDGSYSSDLLESPKGNLDQKLEKD* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0872 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Gso18g0872 857 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Gso18g0872 857 Pfam RNA recognition motif 2 697 793 IPR007201 -
Gso18g0872 857 CDD RRM1_MEI2_like 198 274 IPR034453 -
Gso18g0872 857 SMART rrm1_1 200 268 IPR000504 GO:0003723
Gso18g0872 857 SMART rrm1_1 699 775 IPR000504 GO:0003723
Gso18g0872 857 SMART rrm1_1 285 353 IPR000504 GO:0003723
Gso18g0872 857 Gene3D - 188 282 IPR012677 -
Gso18g0872 857 SUPERFAMILY RNA-binding domain, RBD 699 784 IPR035979 GO:0003676
Gso18g0872 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Gso18g0872 857 MobiDBLite consensus disorder prediction 482 501 - -
Gso18g0872 857 MobiDBLite consensus disorder prediction 1 33 - -
Gso18g0872 857 PANTHER RNA RECOGNITION MOTIF-CONTAINING 8 853 - -
Gso18g0872 857 CDD RRM3_MEI2_like 700 785 IPR034454 -
Gso18g0872 857 CDD RRM2_MEI2_like 283 353 - -
Gso18g0872 857 Gene3D - 283 381 IPR012677 -
Gso18g0872 857 PANTHER PROTEIN MEI2-LIKE 2 8 853 - -
Gso18g0872 857 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Gso18g0872 857 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Gso18g0872 857 Gene3D - 693 786 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0872 Gso-Chr18 12011068 12019558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0872 194 507 Eukaryotic Initiation Factors Gene Family AT3G16380 23.631 1.31e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0872 - - gmx:100812324 1689.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0872 18 12011068 12019558 Gso8g2568 8 43140085 43149240 GST