Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso18g0872 | ATGGACAAGCATTCTGGGAATTCTTCATCAGCTCATGCTGCTGCAGGTCCATCTGGGATTTCCCCACATAATGTTCCAAAAAAAGCGGGAAGCAGTGCATGGGGAATACCACGTGCCAGTGATGTGTTCCATGACTCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCACATGAAAAATTAGATTTGACTGATTCGGAAAATTATGGTCAACCAGTTGATGATAACTTGCTAACATTAGATAAAGTTCACAAAGAGGATGAGGGACACGATCCTTTTGATGACTTTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGAGGACCTTTTAGCTGGCATTATGGATGATTTTGACCTCAGTAAATTGCCCAGTCAACTGGAGGATTTGGATGAAAATGATCTGTTTGTCAATGGAGGGGGATTTGAGATGGATTTTGAACCCCAAGAGAGCCTCAATATCAGTATGTCCAAGATAGGCATATCAGATGGAATTGCTTCAAATGGTATTGGTCAGTATGCAATCCCAAATGGTGTGGGAACAGTGGCTGGGGAGCATCCCTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAACATCAACAGTAATGTTGAGGACTCTGAATTACGAACACTATTTGAGCAATATGGGGATATCAGAACTTTATACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGATATTCGAGCTGCTCGCACTGCCATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAAGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTAGATCCATCAGTATCAAATGATGACCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAAGAGATCAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCAGCTCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCCAGTCGCCCTGGTGGAGCACGTAGAAACTTGATGCAACAACTGAGTCAAGAACTGGAACAAGATGAAGCTCGAACTTTTAGACATCAAGTAGTTTCACCTGTGGCCAATTCTCCTCCTGGTAGCTGGGCACAATTTGGTAGTCCAGTTGAACAAAATCCATTAGCTTCTTTTAGCAAGTCCCCTGGTTTGGGCCCTGCCAGTCCCATTAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCCCCACATGCAACAACCTCTACCAAGATTGCACCGATTGGCAAGGACCCTGGAAGGGCTGCAAATCAGATGTTTTCTAACTCTGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATATCCTTTCCTGAGCAAAATGTAAAGGCAAGTCCTAGGCCTATATCTACTTTTGGTGAATCAAGTTCTAGTGCATCAAGTATTGGAACACTGTCCGGTCCTCAATTTCTTTGGGGAAGCCCAACTCCTTACTCTGAGCATTCAAACACTCCTGCCTGGTCTTCATCTTCGGTGGGGCTTCCATTTACATCTAGTGTCCAAAGGCAGGGTTTCCCATATACTAGTAATCACAGTCCTTTTCTTGGCTCCCACTCTCATCATCATGTTGGATCTGCTCCATCTGGCCTTCCGCTTGATAGGCATTTTAGCTACTTCCCTGAGTCACCTGAAGCTTCTCTCATGAGCCCGGTTGCATTTGGGAATTTAAATCACGGTGATGGGAATTTTATGATGAACAACATTAGTGCTCGTGCATCTGTAGGAGCCAGTGTTGGTCTTTCTGGAAATACCCCTGAAATTAGTTCACCCAATTTCAGAATGATGTCTCTGCCTAGACATGGTTCCTTGTTCCATGGAAATAGTTTGTATTCTGGACCTGGAGCAACTAACATTGAGGGATTAGCTGAACGTGGACGAAGTAGACGACCTGAAAATGGTGGGAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGATCTTGACAAAATCGTCTGTGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTATACGTCGAAGATGCTGCTTGCTGCAATTGATGAGAATCACCAGGGTACTTATGACTTCCTCTACTTGCCAATTGACTTCAAGAATAAGTGTAATGTGGGTTATGCTTTTATCAATATGGTGTCTCCTTCACACATCATCGCCTTCTACAAGGCCTTTAATGGGAAAAAGTGGGAGAAGTTCAACAGTGAAAAGGTTGCTTCACTGGCATATGCACGGATACAAGGAAAGGCTGCGCTTGTGATGCATTTCCAGAATTCAAGCTTAATGAATGAGGACAAACGGTGCCGGCCAATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGACCAGGAACATTTTCTATCCAGCAATTTGAATATTTGCATTCGCCAACCAGATGGATCCTATTCAAGTGATTTGTTGGAGAGCCCAAAGGGCAATTTGGATCAGAAGCTAGAGAAAGATTAA | 2574 | 0.4242 | MDKHSGNSSSAHAAAGPSGISPHNVPKKAGSSAWGIPRASDVFHDSSDVSLFSSSLPVLPHEKLDLTDSENYGQPVDDNLLTLDKVHKEDEGHDPFDDFETNAIGNMLPDDEEDLLAGIMDDFDLSKLPSQLEDLDENDLFVNGGGFEMDFEPQESLNISMSKIGISDGIASNGIGQYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVVSPVANSPPGSWAQFGSPVEQNPLASFSKSPGLGPASPINTNHLSGLAAILSPHATTSTKIAPIGKDPGRAANQMFSNSGSTQGAAFQHSISFPEQNVKASPRPISTFGESSSSASSIGTLSGPQFLWGSPTPYSEHSNTPAWSSSSVGLPFTSSVQRQGFPYTSNHSPFLGSHSHHHVGSAPSGLPLDRHFSYFPESPEASLMSPVAFGNLNHGDGNFMMNNISARASVGASVGLSGNTPEISSPNFRMMSLPRHGSLFHGNSLYSGPGATNIEGLAERGRSRRPENGGNQIDSKKLYQLDLDKIVCGEDTRTTLMIKNIPNKYTSKMLLAAIDENHQGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIAFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGDQEHFLSSNLNICIRQPDGSYSSDLLESPKGNLDQKLEKD* | 858 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso18g0872 | 857 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 286 | 351 | IPR000504 | GO:0003723 | |
Gso18g0872 | 857 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 201 | 265 | IPR000504 | GO:0003723 | |
Gso18g0872 | 857 | Pfam | RNA recognition motif 2 | 697 | 793 | IPR007201 | - | |
Gso18g0872 | 857 | CDD | RRM1_MEI2_like | 198 | 274 | IPR034453 | - | |
Gso18g0872 | 857 | SMART | rrm1_1 | 200 | 268 | IPR000504 | GO:0003723 | |
Gso18g0872 | 857 | SMART | rrm1_1 | 699 | 775 | IPR000504 | GO:0003723 | |
Gso18g0872 | 857 | SMART | rrm1_1 | 285 | 353 | IPR000504 | GO:0003723 | |
Gso18g0872 | 857 | Gene3D | - | 188 | 282 | IPR012677 | - | |
Gso18g0872 | 857 | SUPERFAMILY | RNA-binding domain, RBD | 699 | 784 | IPR035979 | GO:0003676 | |
Gso18g0872 | 857 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 199 | 272 | IPR000504 | GO:0003723 | |
Gso18g0872 | 857 | MobiDBLite | consensus disorder prediction | 482 | 501 | - | - | |
Gso18g0872 | 857 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Gso18g0872 | 857 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 8 | 853 | - | - | |
Gso18g0872 | 857 | CDD | RRM3_MEI2_like | 700 | 785 | IPR034454 | - | |
Gso18g0872 | 857 | CDD | RRM2_MEI2_like | 283 | 353 | - | - | |
Gso18g0872 | 857 | Gene3D | - | 283 | 381 | IPR012677 | - | |
Gso18g0872 | 857 | PANTHER | PROTEIN MEI2-LIKE 2 | 8 | 853 | - | - | |
Gso18g0872 | 857 | SUPERFAMILY | RNA-binding domain, RBD | 196 | 359 | IPR035979 | GO:0003676 | |
Gso18g0872 | 857 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 284 | 357 | IPR000504 | GO:0003723 | |
Gso18g0872 | 857 | Gene3D | - | 693 | 786 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso18g0872 | Gso-Chr18 | 12011068 | 12019558 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso18g0872 | 194 | 507 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 23.631 | 1.31e-11 | 66.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso18g0872 | - | - | gmx:100812324 | 1689.86 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso18g0872 | 18 | 12011068 | 12019558 | Gso8g2568 | 8 | 43140085 | 43149240 | GST |