Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0871 ATGCAGCAAGATCACAGGAAAAAGAGTTCAGCTGAGATGGACTTTTTCTCCGAATATGGTGATGCCAACCGGTACAAAATTCAAGAAGTCATTGGGAAGGGAAGTTATGGTGTTGTCTGTTCAGCCATTGACACTCACACAGGTGAAAAAGTGGCAATTAAGAAGATTCATGACATCTTCGAGCATATATCCGATGCTGCTCGTATTCTCCGTGAGATAAAGCTGCTTAGACTTCTACGACATCCTGATATTGTTGAAATAAAACACATTATGCTGCCTCCGTCAAGGAAGGACTTTAAAGATATTTACGTTGTTTTTGAGCTCATGGAGTCTGATCTTCATCAAGTCATTAAAGCCAATGATGACTTGACAAAAGAACACTATCAGTTTTTTCTTTACCAATTACTTCGAGCACTGAAGTACATTCACACGGCAAATGTCTATCATCGAGATTTGAAGCCAAAGAATATACTTGCTAATGCGAACTGTAAGCTTAAAATATGTGATTTTGGGTTAGCTAGAGTTGCCTTCAGTGACACACCAACAACTATATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCTCCAGAACTATGTGGATCATTTTACTCTAAGTATACACCAGCAATTGATATATGGAGTATAGGTTGCATCTTTGCTGAAGTACTAACAGGAAAGCCACTTTTTCCTGGGAAAAATGTAGTTCATCAATTGGATCTGATGACAGATCTGCTTGGAACTCCTTCACTAGATACTATATCTCGGGTACGTAATGAGAAGGCAAGGAGATACCTAACTAGCATGAGGAAAAAGCAGCCTGTGCCATTTGCTCAAAAATTTCCCAATGCAGACCCTTTAGCACTAAGGCTACTGGAAAAGTTGTTGGCTTTTGATCCAAAAAACCGACCTACTGCTGAAGAGGCTTTGGCTGATCCTTACTTCAAGGGACTGGCAAAAGTTGAGAGGGAACCATCCTGCCAACCTATCACGAAAATGGAATTTGAATTTGAAAGACGAAGAGTCACAAAGGAAGAAATTCGAGAGCTGATTTTCCGTGAGATTCTAGAGTATCATCCTCAACTATTGAAAGACTACATGAATGGAACAGAGAGAACTAATTTTCTTTATCCAAGTGCTGTTGATCAATTCCGAAAGCAGTTTGCTCATCTTGAGGAAAATGGTAAAAATGGCCCTGTTATGCCACTTGATAGAAAGCATGTTTCTCTTCCAAGGTCAACAATTGTACATTCAAATACAGTACACCCAAAAGAGCAAACAAATATTGCTTCCAGCAAAAACCGACCAACAGCCGAGGAATATAACAAGCACCCCAGGGATACAGAAATTCCAGTGCCTAGGTCAATGCAGGGACCACAAAGAATTCCACTAGCAAAACCTGGAAAAGTTGTTGGGCCCGTTGTTCCTTACGAGTACGGTAACATTGTCAAGGATTCATATGATCCTAGGTCATTTATCAGAGGTTCTGTGCTTCCTACACAACCTGTTCCCCCAGCATATTATTATCAAAGATCCAGCACTGGAAACCAAGAAAGGCCATCAACAGAAGCTGACAAGAGTGTGCCTTTGCAGGCAAAACATGCACAACAATGTGGAGTTAATGCCAAGATGGCACCAGATATAGCTATTAATATTGATACAAATCCCTTTTTTATGACCAGGGCAGGAGTTAACAAGTTAGAGCAAGGTGATCAAATAGCCATAGAGACAAACATGCTGCAGCCAAAGGCACATCAATATGGTGGAATCAGTGCTGCAGCTGGGGCCACTGCTCATAGAAAAGTTGGTCCTGTTCAGTATGGTATGACAAGAATGTTTTAG 1845 0.4081 MQQDHRKKSSAEMDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRKDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPVPFAQKFPNADPLALRLLEKLLAFDPKNRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIRELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGKNGPVMPLDRKHVSLPRSTIVHSNTVHPKEQTNIASSKNRPTAEEYNKHPRDTEIPVPRSMQGPQRIPLAKPGKVVGPVVPYEYGNIVKDSYDPRSFIRGSVLPTQPVPPAYYYQRSSTGNQERPSTEADKSVPLQAKHAQQCGVNAKMAPDIAINIDTNPFFMTRAGVNKLEQGDQIAIETNMLQPKAHQYGGISAAAGATAHRKVGPVQYGMTRMF* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0871 614 MobiDBLite consensus disorder prediction 504 527 - -
Gso18g0871 614 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0871 614 MobiDBLite consensus disorder prediction 507 525 - -
Gso18g0871 614 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0871 614 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Gso18g0871 614 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Gso18g0871 614 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Gso18g0871 614 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 491 - -
Gso18g0871 614 MobiDBLite consensus disorder prediction 428 465 - -
Gso18g0871 614 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Gso18g0871 614 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Gso18g0871 614 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0871 614 CDD STKc_TDY_MAPK 24 361 - -
Gso18g0871 614 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0871 Gso-Chr18 11951086 11957724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0871 1 435 MAP Kinase Gene Family AT2G42880 88.532 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Gso18g0871 Pkinase 3.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0871 - - gmx:100811788 1207.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0871 18 11951086 11957724 Gso8g2569 8 43175864 43182594 GST
Gso18g0871 18 11951086 11957724 Gso14g0240 14 2094007 2100003 PCT
Gso18g0871 18 11951086 11957724 Gso2g2432 2 48881338 48888189 PCT
Gso14g0240 14 2094007 2100003 Gso18g0871 18 11951086 11957724 PCT
Gso2g2432 2 48881338 48888189 Gso18g0871 18 11951086 11957724 PCT