Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0865 ATGCTTTCAACCATGGAGGATCCAAATCAAGCTCAAGAAGGGTCTTCTCAGAAGAAAATGGGAAGAGGGAAGATTGAAATCAAACGGATCGAGAACACCACCAATAGGCAAGTCACCTTCTGCAAGCGCCGCAACGGTTTGCTGAAGAAAGCTTATGAATTATCAGTTCTGTGTGATGCGGAAGTTGCCCTTGTTGTCTTCTCAACCCGTGGCCGTTTGTATGAGTATGCCAACAACAGTGTTAGGGCCACCATTGAAAGGTACAAGAAGGCAAATGCTGCTGCTTCAAACGCAGAATCCGTATCTGAAGCTAACACACAGTTTTACCAGCAAGAGTCATCCAAATTGAGAAGACAAATTCGAGATATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCACTTGGTTCTCTGAGTCTCAAGGAACTAAAGAACCTCGAGGGTAGATTGGAGAAAGGATTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGATGTCGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAATAATTATCTGCGAGCTAAGATAGCTGAACATGAGAGAGCTCAACAACAGCAATCAAATATGATGTCAGGAACACTGTGCGAGTCCCTTCCTTCACAATCATACGACAGGAATTTTTTCCCTGTAAATCTCATAGCTTCTGATGATCAACAACAATATTCTAGTCAAGACCACACTGCTCTCCAACTTGTCTGA 741 0.4291 MLSTMEDPNQAQEGSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKANAAASNAESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQSNMMSGTLCESLPSQSYDRNFFPVNLIASDDQQQYSSQDHTALQLV* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0865 246 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED 16 240 - -
Gso18g0865 246 SUPERFAMILY SRF-like 21 93 IPR036879 GO:0003677|GO:0046983
Gso18g0865 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Gso18g0865 246 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Gso18g0865 246 Gene3D - 32 104 IPR036879 GO:0003677|GO:0046983
Gso18g0865 246 PANTHER MADS BOX PROTEIN 16 240 - -
Gso18g0865 246 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Gso18g0865 246 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Gso18g0865 246 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Gso18g0865 246 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Gso18g0865 246 Coils Coil 179 199 - -
Gso18g0865 246 Pfam K-box region 104 190 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso18g0865 246 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Gso18g0865 246 ProSiteProfiles K-box domain profile. 106 196 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gso18g0865 246 MobiDBLite consensus disorder prediction 1 26 - -
Gso18g0865 246 CDD MADS_MEF2_like 21 88 IPR033896 GO:0000977|GO:0045944
Gso18g0865 246 MobiDBLite consensus disorder prediction 1 17 - -
Gso18g0865 246 Coils Coil 109 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0865 Gso-Chr18 11786868 11796067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0865 2 246 MADS-box Gene Family AT3G58780 68.379 2.18e-120 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gso18g0865 K-box 3.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0865 K09264 - gmx:100808734 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0865 18 11786868 11796067 Gso8g2573 8 43242951 43252287 GST
Gso18g0865 18 11786868 11796067 Gso14g0232 14 2030358 2038270 PCT
Gso14g0232 14 2030358 2038270 Gso18g0865 18 11786868 11796067 PCT