Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0855 ATGGAAACTGAAAAGTCTAATGTTTCAAAGGCTGAAGAATTTAAACTCCTTGCCAATGAAGTGTTCAATGCTCGAAAATACTCCCAAGCCATTGATCTATATACACAAGCAATTGAGCTGAACAGTCAAAATGCAGTTTACTTTTCTAATCGTGCCTTTGCCCATCTTCGGCTTGAGGAATATGGTAGTGCAATACAAGATGCCACAAAGGCTATTGAAATTGATCCTAAATATTCGAAGGGTTATTACAGGCGAGGCGCTGCTCATCTTGGACTGGGGAAATTCAAGGAAGCACTGAAAGATTTTCAGCAGGTCAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAGTTATGAAACTTAAATTTGAAGAAGCAATTGCTGCACCAGAGTCTGAAAGGCGTTCAATAGCTGAATCCATAGATTTCCGTACGATAGATGTTGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGTTGTTACTTTGGATTTTGTGAAAAAAATGATTGAAGATTTCAAGAACCAGAAGTTCTTACATAAACGGTATGCATTCCAGATTGTATTGCAAACAAGAGAGGCATTGCAAGCTTTGCCTTCTCTTGTTGACATACATGTTCCTGATGGAAAACATTTTACTGTTTGTGGTGATGTGCATGGTCAGTACTATGATCTTCTGAATATTTTTGAGCTTAATGGGCTTCCTTCAGAAGAGAATCCGTATCTATTTAATGGTGACTTTGTGGATAGGGGATCCTTTTCATTGGAAGTTATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGCCATATATTTAGCCAGAGGAAATCATGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCGAAGTTGAATGAAACATTTGTCGAACTATTTGCAGAAGTATTCTGCTGTTTGCCTTTGGCTCATGTGATAAATGAGAAAGTTTTCGTAGTACATGGTGGTCTTTTTAGTGTTGATGGAGTCAAAGTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGGGTTGATGTGTGAATTGCTCTGGAGTGATCCACAACCTCTCCCTGGAAGGGGCCCAAGCAAGCGTGGTGTAGGCCTTTCTTTTGGTGCAGATGTTACAAAAAGGTTTTTGCAGGAAAATAATTTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGACGAGGGTTATGAGATTGAACATGATGGTAAACTCATAACTGTGTTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAGGGTGCCTTTATTCGATTTGAAGCGCCTGATTTGAAACCTAACATTGTCACATTCTCAGCGGTGCCACACCCTGATGTCAAACCTATGGCTTATGCAAACAACTTCCTCCGGATGTTCTCATAA 1449 0.3989 METEKSNVSKAEEFKLLANEVFNARKYSQAIDLYTQAIELNSQNAVYFSNRAFAHLRLEEYGSAIQDATKAIEIDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIAAPESERRSIAESIDFRTIDVEPQYSGARIEGDVVTLDFVKKMIEDFKNQKFLHKRYAFQIVLQTREALQALPSLVDIHVPDGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNETFVELFAEVFCCLPLAHVINEKVFVVHGGLFSVDGVKVSDIRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRMFS* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0855 482 CDD MPP_PP5_C 160 475 IPR041753 -
Gso18g0855 482 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Gso18g0855 482 SMART pp2a_7 188 464 IPR006186 GO:0016787
Gso18g0855 482 PANTHER BNAC09G39960D PROTEIN 11 481 - -
Gso18g0855 482 SUPERFAMILY TPR-like 7 137 IPR011990 GO:0005515
Gso18g0855 482 SMART tpr_5 45 78 IPR019734 GO:0005515
Gso18g0855 482 SMART tpr_5 79 112 IPR019734 GO:0005515
Gso18g0855 482 SMART tpr_5 11 44 IPR019734 GO:0005515
Gso18g0855 482 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Gso18g0855 482 PRINTS Serine/threonine phosphatase family signature 220 247 IPR006186 GO:0016787
Gso18g0855 482 PRINTS Serine/threonine phosphatase family signature 250 277 IPR006186 GO:0016787
Gso18g0855 482 PRINTS Serine/threonine phosphatase family signature 283 307 IPR006186 GO:0016787
Gso18g0855 482 PRINTS Serine/threonine phosphatase family signature 317 343 IPR006186 GO:0016787
Gso18g0855 482 PRINTS Serine/threonine phosphatase family signature 347 374 IPR006186 GO:0016787
Gso18g0855 482 PRINTS Serine/threonine phosphatase family signature 403 423 IPR006186 GO:0016787
Gso18g0855 482 PRINTS Serine/threonine phosphatase family signature 425 441 IPR006186 GO:0016787
Gso18g0855 482 Gene3D Tetratricopeptide repeat domain 3 133 IPR011990 GO:0005515
Gso18g0855 482 SUPERFAMILY Metallo-dependent phosphatases 168 476 IPR029052 -
Gso18g0855 482 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Gso18g0855 482 Pfam Calcineurin-like phosphoesterase 220 414 IPR004843 GO:0016787
Gso18g0855 482 Pfam PPP5 TPR repeat region 119 212 IPR013235 -
Gso18g0855 482 Gene3D - 134 481 IPR029052 -
Gso18g0855 482 PIRSF PPPtase_5 1 482 - -
Gso18g0855 482 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Gso18g0855 482 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 11 481 - -
Gso18g0855 482 Pfam Tetratricopeptide repeat 17 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0855 Gso-Chr18 11560811 11571510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0855 222 404 Calmodulin-binding Proteins AT5G63870 36.406 1.76e-37 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0855 K04460 - gmx:100806083 890.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0855 18 11560811 11571510 Gso8g2579 8 43316561 43326688 GST