Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0826 ATGTCGCCTAGTTTCGTCTTCGATCCTCCTAGCGACGAAGAAATCGAACACTCTGAACACGAAGAAGAAGAAGAATCCGAAGAAGAACCAGAGTCAGGATCAGGAACAGGATCAGAATCAGAGTCAGAAGGAGAAGGAGAAGAAGAAGAAGGGCACGAAGAAGCGCGGGTTCCGAAGAAGAAGAAGAAGAAAACGCAGTCTCCATGGGACTTTGCTAAATACACGGAATCAGTGGCGGAGGAACACGCTCGCAGGAGCACAACCTCGGTCGACGAGAAAATCTCCAAAGCACTCAAACAACGTTCCACGCCGCTCGTTGCTGAGCTTGACCACAGCTCCGAGTCCGAACCTGATGAACAAGTAGAAGATTATAGACCAGAGGAAGAAGATGAAGAAGAGGGTAATGATGGTGATAGCAAATCCTTTTTTGCTCCTTCTGATGGAACCTCTTTCCATGCTGATTCCTTCTTGCAGCTCAATCTGTCTCGCCCTTTGCTCCGGGCTTGTGAGGCCTTGGGGTATTCTAAACCAACGCCAATTCAGGCAGCTTGTATTCCATTGGCATTGAGTGGTCGTGATATATGTGGTAGTGCCATTACTGGGTCAGGGAAGACAGCTGCATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCAACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGCTGCTTTGAGAACAATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATGCTATGTCCGTGGATTTGGATGATCTTGCTGTTCTAATCCTTGATGAGGCTGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAAGAACTTGTTCGCTTGTGTCCCAAAAAAAGGCAGACTATGTTGTTTTCAGCAACAATGACTGAGGAGGTTGACGAACTTATTAAACTTTCCCTGTCAAAGCCCTTGCGTCTTTCTGCTGACCCATCTACAAAACGGCCAGCAACCTTGACTGAGGAAGTTGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCCAAAGTCATCATCTTCAGTGGAACAAAGCAAGCTGCGCATAGATTGAAGATTATATTTGGATTAGCTGGCTCAAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAGCGCCTTGAGGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACAGATGTGGCTGCCCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGCGATCTTACTAGCTATGTTCATCGAGTTGGTCGTACTGCAAGAGCTGGAAGAGAAGGATATGCAGTCACTTTTGTGACTGACAATGACCGATCACTTTTAAAAGCCATTGCAAAGAGGGCAGGTTCAAAGCTGAAAAGCCGCATTGTTGCCGAGCAATCTATACATAAGTGGTCTCATATAATTGAGCAAATGGAAGACCAAATTTCTGAAGTACTTCAAGAAGAGAGAGAAGAAAGAGTTCTAAGAAAAGCCGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAGGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAAAAGCTTGCTTCAAAAGCATCCAAGGCATCCATGGATAATAGCAAGAGTTCTGGGAAAGATGTAATTAGTGCTGAACAAGCTGAAAACCTTAGAATGAAGGAGAAGAGGAAGCGAGAGCGTGAGAAACATTTGCCTAGAAAGCAGCGTAGAAAGTTGGAAGCAGCTAGAGAGATGCTGGAGGATGAGGAGGAGGATGGTAAACAAGTAGAGGCTAAGGGGGGGAATAAAAAAGACAAGGGTGGAATGTCACTTGTTGATCTTGCATACCGACGGGCAAAAGCAGTAAAGGCTGTCAAGAAGGCATTAGATTCTGGCAAGATTGTGGAGAAGAATAAAAAGAAATCTAATAATAATTCCCGGAAAACTCCTTCAAGGACAGAAGAGATGCGGGAGCTATTCCAGACTGACATGAAGGATAAAAAGCCAAAAAGAGGTGTTGGAGGAGGAAAGAAGTCAAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 2280 0.4496 MSPSFVFDPPSDEEIEHSEHEEEEESEEEPESGSGTGSESESEGEGEEEEGHEEARVPKKKKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLVAELDHSSESEPDEQVEDYRPEEEDEEEGNDGDSKSFFAPSDGTSFHADSFLQLNLSRPLLRACEALGYSKPTPIQAACIPLALSGRDICGSAITGSGKTAAFALPTLERLLFRPKRMRAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKVQEAALRTMPDIVVATPGRMIDHLRNAMSVDLDDLAVLILDEADRLLELGFSAEIQELVRLCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSTKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGSKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSIHKWSHIIEQMEDQISEVLQEEREERVLRKAEMEATKAENMIAHREEIFSRPKRTWFVTEKEKKLASKASKASMDNSKSSGKDVISAEQAENLRMKEKRKREREKHLPRKQRRKLEAAREMLEDEEEDGKQVEAKGGNKKDKGGMSLVDLAYRRAKAVKAVKKALDSGKIVEKNKKKSNNNSRKTPSRTEEMRELFQTDMKDKKPKRGVGGGKKSKSSFKSKSRYKRK* 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0826 759 Coils Coil 532 572 - -
Gso18g0826 759 SMART ultradead3 173 374 IPR014001 -
Gso18g0826 759 SMART helicmild6 409 494 IPR001650 -
Gso18g0826 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 226 514 IPR027417 -
Gso18g0826 759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 185 359 IPR014001 -
Gso18g0826 759 Gene3D - 111 360 IPR027417 -
Gso18g0826 759 Coils Coil 616 638 - -
Gso18g0826 759 MobiDBLite consensus disorder prediction 64 98 - -
Gso18g0826 759 Coils Coil 643 666 - -
Gso18g0826 759 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 305 313 IPR000629 -
Gso18g0826 759 MobiDBLite consensus disorder prediction 738 759 - -
Gso18g0826 759 MobiDBLite consensus disorder prediction 15 34 - -
Gso18g0826 759 PANTHER RNA HELICASE 310 738 - -
Gso18g0826 759 PANTHER RNA HELICASE 59 285 - -
Gso18g0826 759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 533 IPR001650 -
Gso18g0826 759 MobiDBLite consensus disorder prediction 694 737 - -
Gso18g0826 759 Pfam Helicase conserved C-terminal domain 391 494 IPR001650 -
Gso18g0826 759 MobiDBLite consensus disorder prediction 596 677 - -
Gso18g0826 759 MobiDBLite consensus disorder prediction 1 144 - -
Gso18g0826 759 MobiDBLite consensus disorder prediction 640 673 - -
Gso18g0826 759 PANTHER BNAA01G17110D PROTEIN 59 285 - -
Gso18g0826 759 PANTHER BNAA01G17110D PROTEIN 310 738 - -
Gso18g0826 759 MobiDBLite consensus disorder prediction 115 136 - -
Gso18g0826 759 CDD DEADc_DDX27 165 360 - -
Gso18g0826 759 MobiDBLite consensus disorder prediction 601 617 - -
Gso18g0826 759 Pfam DEAD/DEAH box helicase 178 348 IPR011545 GO:0003676|GO:0005524
Gso18g0826 759 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 154 182 IPR014014 GO:0003724
Gso18g0826 759 MobiDBLite consensus disorder prediction 694 759 - -
Gso18g0826 759 Gene3D - 361 549 IPR027417 -
Gso18g0826 759 CDD SF2_C_DEAD 371 503 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0826 Gso-Chr18 10660733 10669868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0826 133 511 Eukaryotic Initiation Factors Gene Family AT3G13920 33.508 2.53e-51 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0826 K13181 - gmx:100776684 1182.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0826 18 10660733 10669868 Gso8g2596 8 43572599 43580842 GST