Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0792 ATGGTTGATTTGGAAATCCAGGTCCCCACCCCATTCGACCCGTTTGCCGAGGCGAGAGAATCGGATGCCCCCGGAGCAAAGGAGTATGTGCATATTCGAATTCAGCAGAGGAATGGGAAGAAGAGTCTGACCACAGTGCAAGGGCTGAAGAAGGAGTTCAGCTACGAGAAGATCCTCAAGGACCTCAAGAAGGAGTTCTGCTGCAACGGAACCGTGGTGCAGGACAAGGAGCTTGGCAAGATCATCCAACTCCAAGGCGACCAGCGTAAGAACGTCTCCCACTTCCTCGTTCAGGCTGGCCTTGTCAGGAAGGACCAGATCAAGATTCATGGTTTTTGA 339 0.5251 MVDLEIQVPTPFDPFAEARESDAPGAKEYVHIRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGTVVQDKELGKIIQLQGDQRKNVSHFLVQAGLVRKDQIKIHGF* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0792 112 CDD eIF1_SUI1 28 111 IPR005874 GO:0003743
Gso18g0792 112 Gene3D - 1 112 - -
Gso18g0792 112 SUPERFAMILY eIF1-like 4 112 IPR036877 GO:0003743|GO:0006413
Gso18g0792 112 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 5 112 IPR005874 GO:0003743
Gso18g0792 112 ProSiteProfiles Translation initiation factor SUI1 family profile. 30 100 IPR001950 GO:0003743|GO:0006413
Gso18g0792 112 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 112 - -
Gso18g0792 112 PANTHER PROTEIN TRANSLATION FACTOR SUI1 HOMOLOG 1 112 - -
Gso18g0792 112 PIRSF Transl_init_SUI1_Euk 1 112 IPR005874 GO:0003743
Gso18g0792 112 Pfam Translation initiation factor SUI1 27 100 IPR001950 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0792 Gso-Chr18 9775048 9776499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0792 1 112 Eukaryotic Initiation Factors Gene Family AT5G54940 82.143 4.17e-68 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0792 K03113 - gmx:100791423 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0792 18 9775048 9776499 Gso8g2626 8 43914284 43916012 GST
Gso18g0792 18 9775048 9776499 Gso14g0195 14 1709302 1710466 PCT
Gso18g0792 18 9775048 9776499 Gso2g2474 2 49227364 49228447 PCT
Gso14g0195 14 1709302 1710466 Gso18g0792 18 9775048 9776499 PCT
Gso2g2474 2 49227364 49228447 Gso18g0792 18 9775048 9776499 PCT