Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0790 ATGCCCTCTGCCCAGGATCCATTTTACGTTGTCAAGGCCGAGATTCAAGATTCTATTGATAAGCTGCAATCTACTTTTCACCAATGGGAAAGCAAGTCCGGTGCTGCGGAACAAGGACATCTTACAAAGGAGGTTCTTGCTGGATGCGAAAGCATAGAGTGGCAGGTGGATGAATTGGATAAGGCAATTGCTATAGCATCTAGAGATCCTTCTTGGTATGGGATAGATGAAGCTGAGGTCGAAAGCCGAAGGAGATGGACAAGTAACACTCGTTCTCAGGTTGGCACAATGAAGAAAGCAGTGGAATCTGGCAAGGGCTCAAGTACCACAAGCCATGCTAGTGTTAATGGGATGCGCCGAGAACTAATGAGGCTACCAAATTCTCATCAAACTGATAGCTCTAACCAGTATGCTGCCCGAGATAATGATGATTTCATACTATCAGAATCAGATAGACAAACACTTCTTATAAAGAGACAGGATGAGGAATTGGATGAGCTTAGTGAAAGTGTACGAAGAATCGGAGGTGTTGGACTTACAATACATGATGAACTCACTGCACAGGAAAAGATTCTAGATGAACTTGGTTCCGAGATGGACAGTACAACAAATCGTCTTGATTTTGTCCAAAAAAAAGTGGCGATGGTTATGAAAAAGGCTAGTGCAAAGGGTCAGATCATGATGATATTGGGTTTGTTGGCCCTGTTCATCTTCCTCTTTATCTTAGTATTCTTCACCTAG 741 0.4305 MPSAQDPFYVVKAEIQDSIDKLQSTFHQWESKSGAAEQGHLTKEVLAGCESIEWQVDELDKAIAIASRDPSWYGIDEAEVESRRRWTSNTRSQVGTMKKAVESGKGSSTTSHASVNGMRRELMRLPNSHQTDSSNQYAARDNDDFILSESDRQTLLIKRQDEELDELSESVRRIGGVGLTIHDELTAQEKILDELGSEMDSTTNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFILVFFT* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0790 246 SUPERFAMILY t-snare proteins 5 102 IPR010989 GO:0016020|GO:0016192
Gso18g0790 246 PANTHER SYNTAXIN PROTEIN 1 245 - -
Gso18g0790 246 SMART tSNARE_6 149 216 IPR000727 -
Gso18g0790 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Gso18g0790 246 SUPERFAMILY SNARE fusion complex 152 216 - -
Gso18g0790 246 Coils Coil 192 212 - -
Gso18g0790 246 Gene3D - 161 225 - -
Gso18g0790 246 Pfam SNARE domain 191 242 IPR000727 -
Gso18g0790 246 Gene3D - 2 104 - -
Gso18g0790 246 PANTHER SYNTAXIN 1 245 IPR045242 -
Gso18g0790 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Gso18g0790 246 MobiDBLite consensus disorder prediction 88 113 - -
Gso18g0790 246 CDD SNARE_Qc 157 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0790 Gso-Chr18 9759323 9763232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0790 55 246 SNARE and Associated Proteins AT1G28490 69.271 1.07e-93 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0790 K08500 - gmx:100790368 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0790 18 9759323 9763232 Gso8g2628 8 43926308 43930275 GST
Gso18g0790 18 9759323 9763232 Gso14g0194 14 1703638 1707284 PCT
Gso18g0790 18 9759323 9763232 Gso2g2475 2 49229245 49233224 PCT
Gso14g0194 14 1703638 1707284 Gso18g0790 18 9759323 9763232 PCT
Gso2g2475 2 49229245 49233224 Gso18g0790 18 9759323 9763232 PCT