Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0787 ATGGAGGGTATGGCAAACATTTGTGATGATGCAACCGAGGGCGACAATGCGTTCCTAACCATGTTTGGTGGCGATGAAAGTGGTGGCAGTGGCGGTAGCGATGGCAGAAGCGGTGGTGATCAGGGTGGTGGCAATGTGGAGGATGTGGCTCTGAAGAAGGGTCCTTGGACAACTGCAGAGGATGCTATTCTAACGGATTATGTGACAAAACATGGTGAAGGGAATTGGAATGCAGTGCAGAGGAACACGGGGTTGAATAGATGTGGCAAGAGTTGTAGGCTCAGATGGGCTAACCATTTGAGGCCCAATTTGAAAAAGGGTGCATTCTCACCTGAGGAAGAAAAGATCATTGTTGATCTTCATTCACAGTTTGGCAACAAATGGGCCAGAATGGCTGCTTTGTTGCCTGGGAGAACAGACAATGAAATCAAGAACTATTGGAACACAAGGATTAAACGCCGCCAAAGGCAGGGTCTCCCTCTCTATTCAGATGAGCATGATCATAACCATCGTTCCACAACACCAACCTCTCCCACCACACCTTCCCCATGCCTCACACCAACAGGATCAAACCCCAACATTGCCACAAGTTTTGAGTTCTTCAATCAAAACCAACAACAACAACAACAATACCAACACCAATACCAATACCAACAACAACAACACCCTCTATCTCCAACTGCATCTCATCATTCCCCTCTCAGTTCCCCTCTTCAACACAGACAACCCTTCACCTCTTCATCACCTCACAATTTCTTAGACCATTCACCTCTTCCACTCTCCTCCTCTTCACCCTCCCCTCTCTCCTTCTCCTTCCAAAAACCAGCACCAATGCTAAGCACCCCTCTTCGCTTCAAGCGCTACCGCACCTCTCCAAGCTACAACAACCACCTCTCTGACCCTCCTCTCACCACCCAATTCCCTCACCTTGATGGATTCAGGTTCCCAGTTTCTTCAGGCTTTTCTCAGTTTTTTCAGCCCTCTTTATTAGACTCCGATCGAGGCGTTTCTTCTTCCTCCTCTTTGGCTTTCCAACCCAAGTTGGAGCTCCCTTCAAGCCAGTATTATAAACCACCCCATGAGCAAGACATTAAGCTTGACATTGAGTTCAATGATCCTTCTTTTCAAAGTAGTAGTAGTGGCTTTCTGGGGGATCTTCTCTTCGAGGCTCAGGCAATGGCTTCAGGCCAAAACTCAAAGAAACGAGGTTACTTGAGTTTGAATGAGAGAAATGATGTGTTTGATGCATGCCAAAGCTTTGAGAACTTTCCATCTAGCTCTCTTTACTGGCCTTCTTCAACTTCTGAACCAAAACCAAAGGAAGAGGCACCGGACTTCAGTAAATTCATGAATGAGGAGGTGTCATCATTGCTTACAGTGGTTCCATCTTCCAGTATGCATGGTCATGAGTGGCACAATAACAGTGCCACAGAAGTGTCCAATGTCCAATCGTCTGGTAGTGGCAAGACAGATGACAATTTTGTACTTGATATCAAACCCATAACTTCATTGTTTCCTCTCTCCAACACCGCAAGCCATGATGAAAACCAAGGATGCTACTCTTGGGACAATTTACCTGGTCTCTTCTAA 1590 0.4642 MEGMANICDDATEGDNAFLTMFGGDESGGSGGSDGRSGGDQGGGNVEDVALKKGPWTTAEDAILTDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLRPNLKKGAFSPEEEKIIVDLHSQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDEHDHNHRSTTPTSPTTPSPCLTPTGSNPNIATSFEFFNQNQQQQQQYQHQYQYQQQQHPLSPTASHHSPLSSPLQHRQPFTSSSPHNFLDHSPLPLSSSSPSPLSFSFQKPAPMLSTPLRFKRYRTSPSYNNHLSDPPLTTQFPHLDGFRFPVSSGFSQFFQPSLLDSDRGVSSSSSLAFQPKLELPSSQYYKPPHEQDIKLDIEFNDPSFQSSSSGFLGDLLFEAQAMASGQNSKKRGYLSLNERNDVFDACQSFENFPSSSLYWPSSTSEPKPKEEAPDFSKFMNEEVSSLLTVVPSSSMHGHEWHNNSATEVSNVQSSGSGKTDDNFVLDIKPITSLFPLSNTASHDENQGCYSWDNLPGLF* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0787 529 Gene3D - 108 178 - -
Gso18g0787 529 Pfam Myb-like DNA-binding domain 106 149 IPR001005 -
Gso18g0787 529 Pfam Myb-like DNA-binding domain 53 100 IPR001005 -
Gso18g0787 529 CDD SANT 55 100 IPR001005 -
Gso18g0787 529 ProSiteProfiles Myb-like domain profile. 101 151 IPR001005 -
Gso18g0787 529 Gene3D - 52 105 - -
Gso18g0787 529 MobiDBLite consensus disorder prediction 173 269 - -
Gso18g0787 529 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 48 100 IPR017930 -
Gso18g0787 529 MobiDBLite consensus disorder prediction 19 52 - -
Gso18g0787 529 CDD SANT 108 149 IPR001005 -
Gso18g0787 529 SMART sant 105 153 IPR001005 -
Gso18g0787 529 SMART sant 52 102 IPR001005 -
Gso18g0787 529 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 34 524 - -
Gso18g0787 529 MobiDBLite consensus disorder prediction 162 269 - -
Gso18g0787 529 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 155 IPR017930 -
Gso18g0787 529 SUPERFAMILY Homeodomain-like 51 147 IPR009057 -
Gso18g0787 529 ProSiteProfiles Myb-like domain profile. 48 100 IPR001005 -
Gso18g0787 529 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 34 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0787 Gso-Chr18 9707749 9711587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0787 28 190 MYB Transcription Factor Family AT4G26930 63.030 5.91e-68 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g0787 Myb_DNA-binding 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0787 - - gmx:102659401 944.88