Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0754 ATGGATCAAGAAAACCCGGAAAAGGAGCCTAAGTGCTATGAAGTTGTTCATTCTGATTGTTTGGATCCCAAGGATCCTATATGCCTGAAGGATATACAGGAGGTCCAGGAAATCATTGAAGGGGTTGGAGACAAGGATGTGGATTTCACTACCAACAAGATGGTCCTAGATGATATAGAACATATGATGGGAATGGAGGACATGTCTACCCAAGCAAATGGTTTTGATAAGGAGCAGGAGCTAATGAATGAGTTTGAGCAGGTTATGAAAGGAACTGAGGATCTTATTTGTGATAGTGAATTCATCCCCTTGAACTTGGGATTAGATAACACACAGTGTGATGGTGGTGAAGTTGGGTTGATGGATTACCAAGCAGAAATGGAAGAAGGAGAACTCTCTGGAGACTTGGGAATAGATGGCAATTCATTTGATGTGGCTTCTGCAAATGCTTTAATATTACAACAGATGGAAGTAGACGAGGTTCAGGAGCCAGAAAATGTAACTGGAAACATGATATATCCTTCTAAGATTGAGATTCAAGAAAAGTGGCAAGAAGGGATTGTATGCGGAGTTGAAGTAGCAATTTCTGAAGAAACTATTGAATGTCAGAAGGAAGATAAAACAAAGTTGGATAATGCCAGTAAAAAGAATAAGTGTGGTGGGAACAAAGGAAAAAAGAAGAAAGCAAATAGAAAGAAGAGAGCAGAAAAGAACAAACAACTCGGTGTCAAGAGATTGCAGTTAAAGCATGTACAGAGACCAAAAGTTGTCTCACATTGTCGCCATTATCTCAACGGAAGGTGCCATGAGGGTGACAAGTGTCAGTTTTCACATGATGTAGTGCCTCTAACAAAATCCAAGCCATGTACTCACTTTGCTCGTCAGTCTTGCATGAAAGGGGATGATTGCCCATTTGATCACCAGCTTTCAAAATATCCTTGTACCAATTTTGTGTCCAAAGGCCCTTGTTATAGAGGTGATGCTTGCTTGTTTTCGCACCAGGTATCAACCAAAGAAGATATCCCTACACCTTCAAATATGTGCAGACCAGAGTTGTCTCCACTTCTGTCTGGAAATGCAAATTCCAGCGCACCACTTAACAACAATCATGGCTCTAGTTCTGTCAAGCAGAACCACTTAACGAATTCTGCAGGAATTCATTCTTGCACCAGTGTTGAACATAAGGTGACAAACACTGTACTTAAACAGCCTACACCACCTAAAGGAATTAGTTTCATCAATCTTGCAAAATTATCACCCAGCCTTAGTTCACTGAAACAAGGCACAGTAACAACCAAGGAAAGTCCTGTACAAATTGGGACCCGTGAAGATCAAAGTGTGTTTCACAAAACTCAAAACAAGGTGGATATTCCTAAGAAATTGCCAACTGTGACACCTAAGGGAATAAACTTTCTTTCTTTTGGCAAAGGCTCTGTCTGCAGTTTTAAAAGTGTGAATAGGGACAATGGTATCAAATTGCCTCAGTTATTCAATTTTGGTCTACCCGAGCAGGCAAAATCCTCTCTAAATAAAGATGATTACAACAAAGCTAGTGACAGAACAAAACAAAATGCACCGCAGACTGATATATTCTTAACTGAGATTTTAGGAAAAAATCAATCTGTTGCAGAAGAAATGAAATCAAAGCTTCCAGAGAAAACCTCCGTAGATGTTTTTATGAGGGATTACAGCCATAGTAAATCAGTTCAAGAGGGGATAAAGTCATCTGATAATTCTCAAAGTTCAAAGGGACAAAAGGCATTCTTATCAACTCTAGCATTTGCAGCTGAACATGAATCTGACATTAAGATGAAATACCCTATTGGTGGTTTGCCGATATGA 1842 0.3963 MDQENPEKEPKCYEVVHSDCLDPKDPICLKDIQEVQEIIEGVGDKDVDFTTNKMVLDDIEHMMGMEDMSTQANGFDKEQELMNEFEQVMKGTEDLICDSEFIPLNLGLDNTQCDGGEVGLMDYQAEMEEGELSGDLGIDGNSFDVASANALILQQMEVDEVQEPENVTGNMIYPSKIEIQEKWQEGIVCGVEVAISEETIECQKEDKTKLDNASKKNKCGGNKGKKKKANRKKRAEKNKQLGVKRLQLKHVQRPKVVSHCRHYLNGRCHEGDKCQFSHDVVPLTKSKPCTHFARQSCMKGDDCPFDHQLSKYPCTNFVSKGPCYRGDACLFSHQVSTKEDIPTPSNMCRPELSPLLSGNANSSAPLNNNHGSSSVKQNHLTNSAGIHSCTSVEHKVTNTVLKQPTPPKGISFINLAKLSPSLSSLKQGTVTTKESPVQIGTREDQSVFHKTQNKVDIPKKLPTVTPKGINFLSFGKGSVCSFKSVNRDNGIKLPQLFNFGLPEQAKSSLNKDDYNKASDRTKQNAPQTDIFLTEILGKNQSVAEEMKSKLPEKTSVDVFMRDYSHSKSVQEGIKSSDNSQSSKGQKAFLSTLAFAAEHESDIKMKYPIGGLPI* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0754 613 ProSiteProfiles Zinc finger C3H1-type profile. 313 336 IPR000571 GO:0046872
Gso18g0754 613 SUPERFAMILY CCCH zinc finger 255 279 IPR036855 GO:0046872
Gso18g0754 613 ProSiteProfiles Zinc finger C3H1-type profile. 283 310 IPR000571 GO:0046872
Gso18g0754 613 Gene3D - 285 338 - -
Gso18g0754 613 MobiDBLite consensus disorder prediction 219 238 - -
Gso18g0754 613 SUPERFAMILY CCCH zinc finger 312 338 IPR036855 GO:0046872
Gso18g0754 613 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 221 591 IPR045124 GO:0003723|GO:0045892
Gso18g0754 613 MobiDBLite consensus disorder prediction 212 238 - -
Gso18g0754 613 PANTHER PROTEIN SUPPRESSOR OF SABLE 221 591 - -
Gso18g0754 613 Gene3D - 220 284 - -
Gso18g0754 613 Pfam CCCH-type zinc finger 259 279 IPR041367 -
Gso18g0754 613 ProSiteProfiles Zinc finger C3H1-type profile. 254 281 IPR000571 GO:0046872
Gso18g0754 613 SMART c3hfinal6 311 335 IPR000571 GO:0046872
Gso18g0754 613 SMART c3hfinal6 283 309 IPR000571 GO:0046872
Gso18g0754 613 SMART c3hfinal6 253 280 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0754 Gso-Chr18 9153037 9156911 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso18g0754 zf-CCCH_4 2.7e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0754 - - gsj:114396879 1206.43