Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0748 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAATCAACTGGAACTTCAATTGCAAGAGCAAAGGGATTCTCTCTCTGCTATCGGTCAAGCTCTTCTCTCTGATCCAACTAACCCTGAACTTCTGGCGGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAAGAAGGACTTCTTCACCTAAAACGTGCACGATTGTTACAGGAAGCAGATTCAGTGCTGCATAACACTAATATTTTTACTGAAGAAGAGAAAGTGGAGCCCCTTGATTCCACAGATGTTGAACCAGAGCCATTAGAGGACAAGTGTTATTCTGTTGGATCTAAATGTAGATTCCGTCACAAAGATGGACGTTGGTACAATGGTCAAGTGGTGCAGTTGGATAATGCAGTGGCAAAAGTTTCATTTCTTACTCCTACTTCTGAGAATATGTTGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTAGTAACTGTCGCCTATCACATGGACTTGATGTTCAATTGTCTGCTCTTAAGAAATATGTGCCTACAATCTGGAAGCAGTCTCTTGTGGGGTCAAGTATATGGGCAGTCTCAACTGCAAATGCAGGCACTTGGAGAGAAGCCGAGCTCGAGTCCTTGGACGAAAAAGCTGGAGTTGGACAAGTTGTTTTCCGAGACAACGGAAGTTCTGTGAAAGTTGGTGCTGAAGAAATGGCGCTGTCTGAGCATGCAGAAATGAGTGACTTGGAGAGCGATTCCAGCTTAGTACAATCTGATTCCAGTGACTACGAGGAAGAGGAACCACAAGGTTTAGGATTTCTGGAGAGTACCAACCTACGGAGAGGTATTCAGACCGAAACTGCAACATTTGCCACGTGGGAGAACCACACTAGAGGCATAGCTTCCAAGATGATGGCTAATATGGGGTACAGAGAAGGAATGGGTTTAGGTGTAACCGGTCAGGGAATGCTGGACCCTATACCAGTGAAGGTGCTACCACCAAAGCAGTCCTTAGATCACGCACTGGAGTCTCATAAAAGGGAAGGGAAGGAAGGCAAGAAGAAAAGGAGCCGAGGTGGCAAAAGAAAACGTGAGAAGAAATTTGCAGAAGTGAATCGTGCAGCAAAAGAGGAAGAAGAATCGGCATCAGATGTCTTTGCATTAATAAACAATCACCTGGCAATGCACAGTGAGGCTTTTGGCAGTGGATCAATGAAGAAGCAGCAAAGTAAAGGTTCTGAGGAAGGTAAAAAGGTGGATAGACGGGCATTGGTTGCTTATGAGGAAGAGGTGAAGGATTTGAAGATGAGGGTTGAAAAGCTTGAGCACATTGTGAATGCCAATAGAAAAGAGAAGGCTGTGTATGAGGGTGCTATGAGAAAATTAAATGAAACCCGCAAGGCTTTGGCAGATGCTGAAGCAGTTCATGCCTCTGCCTCAAATTCAGTAACAAGCAAAGAAAAAGAGAAGAGATGGCTCAAGTTTTAG 1479 0.4442 MGSEEERVLENQLELQLQEQRDSLSAIGQALLSDPTNPELLAVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHNTNIFTEEEKVEPLDSTDVEPEPLEDKCYSVGSKCRFRHKDGRWYNGQVVQLDNAVAKVSFLTPTSENMLMCKFFLQQRCRFGSNCRLSHGLDVQLSALKKYVPTIWKQSLVGSSIWAVSTANAGTWREAELESLDEKAGVGQVVFRDNGSSVKVGAEEMALSEHAEMSDLESDSSLVQSDSSDYEEEEPQGLGFLESTNLRRGIQTETATFATWENHTRGIASKMMANMGYREGMGLGVTGQGMLDPIPVKVLPPKQSLDHALESHKREGKEGKKKRSRGGKRKREKKFAEVNRAAKEEEESASDVFALINNHLAMHSEAFGSGSMKKQQSKGSEEGKKVDRRALVAYEEEVKDLKMRVEKLEHIVNANRKEKAVYEGAMRKLNETRKALADAEAVHASASNSVTSKEKEKRWLKF* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0748 492 Gene3D - 119 178 - -
Gso18g0748 492 Coils Coil 44 64 - -
Gso18g0748 492 MobiDBLite consensus disorder prediction 241 266 - -
Gso18g0748 492 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Gso18g0748 492 Coils Coil 421 448 - -
Gso18g0748 492 MobiDBLite consensus disorder prediction 396 416 - -
Gso18g0748 492 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Gso18g0748 492 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Gso18g0748 492 MobiDBLite consensus disorder prediction 339 373 - -
Gso18g0748 492 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 492 - -
Gso18g0748 492 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Gso18g0748 492 Coils Coil 452 472 - -
Gso18g0748 492 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Gso18g0748 492 SMART G-patch_5 292 338 IPR000467 GO:0003676
Gso18g0748 492 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0748 Gso-Chr18 8994748 9000735 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso18g0748 G-patch 1.1e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0748 - - gmx:100794921 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0748 18 8994748 9000735 Gso8g2656 8 44219729 44226109 GST