Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0716 ATGCATGAAGATTTTGAAGGACATAAGGGAACAATAGAAGCTGGTGACTTGCAATGGATGACTGCAGGGAGAGGGATAGTTCACTCAGAAATGCCTGGGGCTCAAGGAATTCACTCAAAAATGCCAGGGGCTCAAGGAACCCAAAGGGGTCTACAGTTGTGGATCAACTTGGCTTCCAAATATAAAATGATTGAACCAAGGTATCAAGAAGTGTTGAGTAAGGACATAGCAGAAGCTGAGGATGATGGTATCAAGGTTAGAGTTATAGCTGGTGAAGCACTAGGGATAAAGTCTCCAATCTACACAAGGACACCAACCATGTTCTTGGACTTCACTCTCAAACCTGGAGGTCACTTGCAACAACCTATACCAAAATCTTGGAATGCTTTTGTGTATGTATTGGAAGGAGAGGGTATCTTTGGAAACATGAAATCTCAGCCTTCAAATTCTCACCATATTCTTCTTCTTGGTGCTGGGGATGGCCTAGAGGCATGGAACCAATCTTCTAAGCTCCTTAGGTTCATTTTGGTTGGAGCAGAACCTTTGGGGGAACCTCTAGTGCAATTTGGACCCTTTGTCATGAACACACAAGAAGAGATTGAGCAAACCATTGATGATTTTGAGAACTTTGCCAACGGATTTGAGAAAGCAAGACATTGGAGATCTGAAAGCCAAATTAATTAA 684 0.4254 MHEDFEGHKGTIEAGDLQWMTAGRGIVHSEMPGAQGIHSKMPGAQGTQRGLQLWINLASKYKMIEPRYQEVLSKDIAEAEDDGIKVRVIAGEALGIKSPIYTRTPTMFLDFTLKPGGHLQQPIPKSWNAFVYVLEGEGIFGNMKSQPSNSHHILLLGAGDGLEAWNQSSKLLRFILVGAEPLGEPLVQFGPFVMNTQEEIEQTIDDFENFANGFEKARHWRSESQIN* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0716 227 CDD cupin_pirin_C 105 181 - -
Gso18g0716 227 Pfam Pirin C-terminal cupin domain 108 212 IPR008778 -
Gso18g0716 227 Gene3D Jelly Rolls 2 208 IPR014710 -
Gso18g0716 227 SUPERFAMILY RmlC-like cupins 1 222 IPR011051 -
Gso18g0716 227 Gene3D Jelly Rolls 77 182 IPR014710 -
Gso18g0716 227 Pfam Pirin 2 55 IPR003829 -
Gso18g0716 227 PIRSF Pirin 1 221 IPR012093 -
Gso18g0716 227 PANTHER PIRIN-RELATED 1 36 IPR012093 -
Gso18g0716 227 PANTHER PIRIN-RELATED 37 225 IPR012093 -
Gso18g0716 227 PANTHER - 37 225 - -
Gso18g0716 227 PANTHER - 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0716 Gso-Chr18 8277180 8283187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0716 1 224 Calmodulin-binding Proteins AT1G50590 65.066 9.28e-103 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0716 K06911 - gmx:100815529 466.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0716 18 8277180 8283187 Gso8g2684 8 44506655 44510247 GST
Gso18g0716 18 8277180 8283187 Gso14g0145 14 1269400 1272675 PCT
Gso18g0716 18 8277180 8283187 Gso2g2518 2 49581512 49584738 PCT
Gso14g0145 14 1269400 1272675 Gso18g0716 18 8277180 8283187 PCT
Gso2g2518 2 49581512 49584738 Gso18g0716 18 8277180 8283187 PCT