Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0707 ATGGCAGAAACTGCAGTGTCCTTGGCTGGTAAGCATGCCCTTCCAAAAATATTGGAAGCTATCAAAATGGTGAGAGATCTCCCAAAAGAAGTTAGAGACATTACAGATGAACTTGAAAGCTTTCAAGATTTCATTAATGATGCTGATAAAGTGGCTGAAGCTGAACAAGATGATGGAAGGCGTCATAGAATAAAAGAAAGGGTGGTGCGGCTGAGAGAAGCAGCTTTTCACATGGAAGATGTCATCGATGAATATAACATCTCCTGTGAGGATAAGCAACCTGGCGATCCTCGATGTGCAGCTTTACTATGTGAGGCTGTTGACTTCATTAAAACTCAAATCCTTCGCCTTCAAAGTGCGTACAAGATTCAGGATGTTAAATCGCTTGTTCGTGCTGAAAGAGATGGTTTCCAAACCCATTTTCCTTTAGAACCAAGACTAACAAGTTCTAGAGGAAATCAAGATGTCACCTGGCAGAAACTTCGAATGGATCCTCTCTTTATCGAGGAAAATGATGTTGTGGGGCTTGATGGCCCTAGAGATACATTGAAAAATTGGTTGACAAAGGGAAGAGAAAAACGCACTGTCATCTCTGTGGTGGGAATTCCTGGGGTGGGAAAAACCACTCTTGCCAAGCAAGTTTATGACCAGGTGCGTAACAATTTCGACTACTATGCATTGATCACAGTGTCTCAATCCTACTCTGCAGAAGGACTACTGAGGCGTTTGTTGGATGAGCTTTGCAAAGTGAACAAGGAGAAACCTCCCAAGGGTGTTTCTAACATGGAGTCGTTGACCGAAGAAGTCAGAAACCGCTTGCGCAACAAGAGGTATGTTGTCTTGTTTGATGACGTATGGAATGAAACATTTTGGGATCACATTGAATCTGCTGTAATTGATAATAAAAATGGAAGTAGGATTTTAATCACAACCAGGGATGTGAAGGTTGCTGGATATTGTAAGAAATCATCATTTGTTGAGGTGCTTAAGCTAGAAGAACCTTTAACTGAAGAAGAATCATTGAAATTGTTTTCTAAGAAGGCATTTCAGTATAGTTCCGATGGAGATTGTCCAGAAGAACTTAAAGATATGTCTCTTGAAATTGTTAGAAAGTGTAAAGGTTTACCTCTAGCAATTGTTGTCATTGGTGGTCTTTTGTCTCAAAAAGATGAAAGTGCACCCGAATGGAAACAGTTTAGTGAAAATCTTTGTTTAGACCAGTTGGAGAGGAATTCTAAGTTAAATAGTATAACAAAAATTTTAGGTCTAAGTTATGAGGATTTGCCGATCAATCTCAGATCATGTTTGTTGTATTTCGGAATGTATCCGGAGGACTATGAAATTAAATCTGATAGATTGATTAGACAGTGGATAGCTGAAGGGTTTGTCAAACATGAAACCGGAAAAATATTGGAAGAAGTTGGGCAACAATATTTATCAGGGTTGGTCCGTAGAAGTTTGGTGCAAGTATCCTCATTCAGAATTGATGGCAAAGTTAAAAGGTGTCGTGTTCATGACTTAATACACGACATGATCCTTAGAAAAGTCAAGGATACAGGGTTTTGTCAGTATATTGACGGGCCTGATCATGCTCTTTGTGTTCCGTAA 1608 0.3961 MAETAVSLAGKHALPKILEAIKMVRDLPKEVRDITDELESFQDFINDADKVAEAEQDDGRRHRIKERVVRLREAAFHMEDVIDEYNISCEDKQPGDPRCAALLCEAVDFIKTQILRLQSAYKIQDVKSLVRAERDGFQTHFPLEPRLTSSRGNQDVTWQKLRMDPLFIEENDVVGLDGPRDTLKNWLTKGREKRTVISVVGIPGVGKTTLAKQVYDQVRNNFDYYALITVSQSYSAEGLLRRLLDELCKVNKEKPPKGVSNMESLTEEVRNRLRNKRYVVLFDDVWNETFWDHIESAVIDNKNGSRILITTRDVKVAGYCKKSSFVEVLKLEEPLTEEESLKLFSKKAFQYSSDGDCPEELKDMSLEIVRKCKGLPLAIVVIGGLLSQKDESAPEWKQFSENLCLDQLERNSKLNSITKILGLSYEDLPINLRSCLLYFGMYPEDYEIKSDRLIRQWIAEGFVKHETGKILEEVGQQYLSGLVRRSLVQVSSFRIDGKVKRCRVHDLIHDMILRKVKDTGFCQYIDGPDHALCVP* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0707 535 Pfam NB-ARC domain 181 427 IPR002182 GO:0043531
Gso18g0707 535 Gene3D - 425 516 IPR036388 -
Gso18g0707 535 Pfam Rx N-terminal domain 11 93 IPR041118 -
Gso18g0707 535 PANTHER DISEASE RESISTANCE PROTEIN RP 26 523 IPR044974 GO:0006952
Gso18g0707 535 Gene3D - 162 328 IPR027417 -
Gso18g0707 535 CDD RX-CC_like 21 128 IPR038005 -
Gso18g0707 535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 439 IPR027417 -
Gso18g0707 535 Gene3D - 334 424 IPR042197 -
Gso18g0707 535 Gene3D - 5 120 - -
Gso18g0707 535 PRINTS Disease resistance protein signature 196 211 - -
Gso18g0707 535 PRINTS Disease resistance protein signature 272 286 - -
Gso18g0707 535 PRINTS Disease resistance protein signature 372 386 - -
Gso18g0707 535 PANTHER - 26 523 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0707 Gso-Chr18 8192354 8195558 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0707 197 383 WRKY Transcription Factor Family AT5G45050 30.851 2.75e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0707 K13457 - gmx:100786451 991.49