Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0692 ATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATATCTTGGGACACTGATGAGGAACGTCTAAAGGAATACTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGGGATCGTGTAACCGGTCGCGCTCGCGGCTTTGGTTTCGTTGTCTTTGCTGATCCTTCTGTTGCAGAAAGAGTCATTATGGATAAACACATAATTGATGGCCGCACAGTTGAAGCAAAGAAAGCTGTTCCTAGGGATGATCAGCAAAATATAAATAGGCAATCTGGTAGTGCACATGCGTCTCCTGGTCCTGGACGCACAAAAAAGATTTTTGTTGGTGGTTTACCATCAACTATCACTGAAAGTGATTTTAAGATGTATTTTGATCAGTTTGGTACAATTACTGATGTTGTAGTTATGTATGATCATAATACACAGAGGCCAAGAGGTTTTGGCTTCATCACTTATGATTCTGAAGAAGCTGTGGATAGAGTTCTTTACAAAACTTTTCATGAACTCAATGGAAAGATGGTTGAGGTGAAGAGGGCAGTTCCCAAAGAACTTTCCCCTGGTCCCAGCCGAAGCCCGTTGATAGGATATAACTATGGTTTGACTAGGGCCAGTAACTACCTAAACAGTTTTGCCCAGGGTTATAATATGAGTCCAATAGGAGGATATGGAATCAGGATGGACGGTAGGTTTAGTCCTCTTACTAGTGGTAGAAGTGGGTTTACTCCTCTTGGCAACACTGGTTATGGAATGGGAGTGAATATGGATTCAGGATTGAGCCCAAACTTTGGAGGGACTTCAAACTATGGGAGCAATGTAGGATATGGTCGAATATTTAGTCCTTTCTACAGTGGCAACTCCGGCCGATATACCACTCCTATAGGCTATAGTGGGGGTAATGGGAGAAGCGATTCTCTTATGAATTCACCTTCTCGGAATGTATGGGGAAATGGGGGCCTCAATAATGCCAATAATCCCATCAGCCCCAGTCCTTTCTTAGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATTGGAAATAGTGGCACAGGTTGGGGTCCATCACTTCCAGCCCAGGGTAGAGGGGATGCTTCTGGCTATGGTACTGGGAATAATGTTTATGAAGGTGGAGATAGCAGCTTTGGATTAGGTGGGGGAGGGTACGGAAGAAACAACAGTACTAGTGTGACACCATCCTCTTCATTTAATGTGTCAACTGGTGGTTATGAAGGATCCTATGGGGACTTATACCGCAGTGGCAGTGGTTCGGTTTACAACAACTCTGCTTGGCGTTCTTCTGCGTCCGATATTGATGGTTCTGGCTCATTTGGTTATGGTCTTGGTGGTATAGCTTCAGATGACCCAGTGAAGAGTTCTGAGGGTTATATTGGAAACTACAATGTTACTAGTAGACAACCTAATAGAGGAATCGCTACCTAG 1440 0.4431 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQNINRQSGSAHASPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPSRSPLIGYNYGLTRASNYLNSFAQGYNMSPIGGYGIRMDGRFSPLTSGRSGFTPLGNTGYGMGVNMDSGLSPNFGGTSNYGSNVGYGRIFSPFYSGNSGRYTTPIGYSGGNGRSDSLMNSPSRNVWGNGGLNNANNPISPSPFLGSGSGAFGVSIGNSGTGWGPSLPAQGRGDASGYGTGNNVYEGGDSSFGLGGGGYGRNNSTSVTPSSSFNVSTGGYEGSYGDLYRSGSGSVYNNSAWRSSASDIDGSGSFGYGLGGIASDDPVKSSEGYIGNYNVTSRQPNRGIAT* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0692 479 MobiDBLite consensus disorder prediction 458 479 - -
Gso18g0692 479 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 478 - -
Gso18g0692 479 Gene3D - 86 194 IPR012677 -
Gso18g0692 479 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Gso18g0692 479 SMART rrm1_1 107 179 IPR000504 GO:0003723
Gso18g0692 479 SMART rrm1_1 7 78 IPR000504 GO:0003723
Gso18g0692 479 MobiDBLite consensus disorder prediction 462 479 - -
Gso18g0692 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Gso18g0692 479 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Gso18g0692 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Gso18g0692 479 SUPERFAMILY RNA-binding domain, RBD 88 192 IPR035979 GO:0003676
Gso18g0692 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Gso18g0692 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Gso18g0692 479 MobiDBLite consensus disorder prediction 80 105 - -
Gso18g0692 479 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Gso18g0692 479 Gene3D - 6 85 IPR012677 -
Gso18g0692 479 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0692 Gso-Chr18 7886447 7890816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0692 2 185 Eukaryotic Initiation Factors Gene Family AT2G36660 29.592 3.75e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0692 K14411 - gmx:100794390 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0692 18 7886447 7890816 Gso8g2692 8 44569565 44573999 GST
Gso18g0692 18 7886447 7890816 Gso14g0141 14 1239097 1243275 PCT
Gso18g0692 18 7886447 7890816 Gso2g2523 2 49620019 49623982 PCT
Gso14g0141 14 1239097 1243275 Gso18g0692 18 7886447 7890816 PCT
Gso2g2523 2 49620019 49623982 Gso18g0692 18 7886447 7890816 PCT