Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0685 ATGGATATTTCGGAGTACACGAGGATTGTTTTTGATAAACTTCAGAGATTTGAGCCTGAGCATACTACAAAGATCATAGGGTATCTCCTTCTCCAAGACCATGGTGAGCAAGAGATGGTGAAGTTGGCTTCACTGCCAGACCATTTAATTCGTGGCGTGGCTTACAAGGCGAGAACTGAGCTTCAAAGGCTGGCTGCTAGATCAGCCATTCAGCCAATTTCACTTCCCATCAACTCTCAACAATGTTTAAACCATTTGTCAGTAATCTCCCCTACTTCGGTAATCACCCCTGGCACTCCTACTTCACCAGCAAGCTTCCAGGTTCAATCTCCGTATTGGGATCCTCAATCTGCTAGCAATACTAATGCAGAATTCATGGCACTGGGTTATTTGGATTCTATCTCAGAATTTCAAAAGCAGACCCCTTTGTTCAGTTTAGATAATCATATGGATACTATGAATTCCGGGACTGCTGGGATTGCTAATGATTACTATGGCTTAGATGCTTCATCAGCTAGTAATTTGGGTGGCAAAAATGGTAGAAGGTTTGAATTTCCAGTCAAGACCTGTCACTATTTCAACAAAGGGTTTTGTAAGCATGGAAATAGTTGTAGATATTATCATGAACATGGCGTCCCTGATATGTTCTCTCACATGTATGGAAATGATACTTTTAATGATGATCCGGTGATTTCACCTGGGTCACTAGCACAATTAGAGTCAGAAATTGTTGAACTCCTGAAAGTAAAAAAAGGCGGTTCAATATCAATTGCTTCCCTTCCAATGGCATACTATGAGAGGTACAAAAAAGTGCTGCAAGCAGAAGGCTACCTGACTGAGAGCCAGAGACATGGTAAGTCTGGCTACAGTTTGACAAAACTTCTTGCACGGTTGAAAAATAGTATTCGGCTAATTGACAGGCCTCATGGGCAGCATTCAGTTGTTCTGGCAGAAGATGCTCCAAAGTTCAACGGAAAGGTAGATTATGGTAAATACATCAGTGCATCACGACAAATATACCTGACATTTCCGGCTGACAGCACTTTTAGCGAGGGTGATGTTTCATACTACTTTAGCACTTTTGGGAAAGTTGAAGATGTAAGGATTCCGAGCCAAGAGAGAAGGATGTTTGGATTTGTGACATTAAATGATCCTGAAACTGTTAAAGTAATTTTGGATAAGGGAAATCCCCATTATGTTTGTGAATCTCGGGTTCTTGTGAAACCTTATAAGGAGAAGCCAAAATTTATGCCCAGGAAGCACTCAGATAGAATCGAGCACTCTGCTTATTATTCACCACACTATGTAGACATTGACACTGAACCCACCTCAATTCCAAGAAGTTTCAGGAACCCTCGATTTCTTAGGAGGCTGCTCATTGAAAAGCAAGAGGAGGCAGCCTTTGAATTTCAGAGACGACGATTTGCAGAGCTGCAAATGGCCCAAAAATCATTGTCCACATCACCCCATTTAGGCTTCAACACAGACGGGTTTAAAGTTTCAGATGAACATTTCAATGTCCAGTCTGCAGAATCTCACAGTCATGCACTGAATGACAAAGCAGGATATACAGATAACAATTGCACTGATGAGGACAGCAATCAAGGACTGAATCTCCCAGACAGCCCATTTGCATTTCCAGTAGATAGTGGATTTTGA 1659 0.4171 MDISEYTRIVFDKLQRFEPEHTTKIIGYLLLQDHGEQEMVKLASLPDHLIRGVAYKARTELQRLAARSAIQPISLPINSQQCLNHLSVISPTSVITPGTPTSPASFQVQSPYWDPQSASNTNAEFMALGYLDSISEFQKQTPLFSLDNHMDTMNSGTAGIANDYYGLDASSASNLGGKNGRRFEFPVKTCHYFNKGFCKHGNSCRYYHEHGVPDMFSHMYGNDTFNDDPVISPGSLAQLESEIVELLKVKKGGSISIASLPMAYYERYKKVLQAEGYLTESQRHGKSGYSLTKLLARLKNSIRLIDRPHGQHSVVLAEDAPKFNGKVDYGKYISASRQIYLTFPADSTFSEGDVSYYFSTFGKVEDVRIPSQERRMFGFVTLNDPETVKVILDKGNPHYVCESRVLVKPYKEKPKFMPRKHSDRIEHSAYYSPHYVDIDTEPTSIPRSFRNPRFLRRLLIEKQEEAAFEFQRRRFAELQMAQKSLSTSPHLGFNTDGFKVSDEHFNVQSAESHSHALNDKAGYTDNNCTDEDSNQGLNLPDSPFAFPVDSGF* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0685 552 Gene3D - 342 415 IPR012677 -
Gso18g0685 552 SUPERFAMILY RNA-binding domain, RBD 348 430 IPR035979 GO:0003676
Gso18g0685 552 Gene3D - 184 248 - -
Gso18g0685 552 MobiDBLite consensus disorder prediction 521 540 - -
Gso18g0685 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 337 413 IPR000504 GO:0003723
Gso18g0685 552 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 551 - -
Gso18g0685 552 Pfam OST-HTH/LOTUS domain 235 314 IPR025605 -
Gso18g0685 552 ProSiteProfiles OST-type HTH domain profile. 235 318 IPR025605 -
Gso18g0685 552 MobiDBLite consensus disorder prediction 521 552 - -
Gso18g0685 552 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 551 - -
Gso18g0685 552 SMART rrm1_1 338 408 IPR000504 GO:0003723
Gso18g0685 552 ProSiteProfiles Zinc finger C3H1-type profile. 184 211 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0685 Gso-Chr18 7771747 7776376 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso18g0685 OST-HTH 1.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0685 - - gmx:100780955 1122.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0685 18 7771747 7776376 Gso8g2697 8 44640801 44645783 GST
Gso18g0685 18 7771747 7776376 Gso14g0133 14 1180512 1186847 PCT
Gso18g0685 18 7771747 7776376 Gso2g2531 2 49681408 49687885 PCT
Gso14g0133 14 1180512 1186847 Gso18g0685 18 7771747 7776376 PCT
Gso2g2531 2 49681408 49687885 Gso18g0685 18 7771747 7776376 PCT