Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0659 ATGGCGGACTCGGACAACGACTCCGGCGGCGCGCACAACGCCGGGAAGGGGAGCGAGATGTCGCCGCGGGAGCAGGACCGGTTCCTGCCGATCGCGAACGTGAGCCGCATCATGAAGAAGGCGCTGCCGGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTGTCGGAGTTCATCAGCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGGGAGAAGCGCAAGACGATCAACGGCGACGACCTGCTCTGGGCGATGACCACTCTCGGCTTCGAGGACTACGTCGAGCCTCTCAAGGGCTACCTCCAGCGCTTCCGAGAAATGGAAGGAGAGAAGACAGTGGCGGCGCGTGACAAGGACGCGCCTCCTCCTACCAATGCTACCAACAGTGCCTACGAGAGTCCTAGTTATGCTGCTGCTCCTGGTGGAATCATGATGCATCAGGGACACGTGTACGGTTCTGCCGGCTTCCATCAAGTGGCTGGTGGTGCTATAAAGGGTGGGCCTGTTTATCCCGGGCCTGGATCCAATGCCGGTAGGCCCAGATAG 567 0.6155 MADSDNDSGGAHNAGKGSEMSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKGYLQRFREMEGEKTVAARDKDAPPPTNATNSAYESPSYAAAPGGIMMHQGHVYGSAGFHQVAGGAIKGGPVYPGPGSNAGRPR* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0659 188 MobiDBLite consensus disorder prediction 118 140 - -
Gso18g0659 188 SUPERFAMILY Histone-fold 25 128 IPR009072 GO:0046982
Gso18g0659 188 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 155 - -
Gso18g0659 188 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Gso18g0659 188 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Gso18g0659 188 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Gso18g0659 188 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Gso18g0659 188 MobiDBLite consensus disorder prediction 1 27 - -
Gso18g0659 188 Gene3D Histone, subunit A 16 145 IPR009072 GO:0046982
Gso18g0659 188 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso18g0659 188 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0659 Gso-Chr18 7302332 7304381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0659 1 158 CCAAT-HAP3 Transcription Factor Family AT4G14540 71.069 5.70e-74 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso18g0659 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0659 K08065 - gmx:100813580 380.563