Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0658 ATGGACGAAGGCGAGGGAGGGTACGGTGAGAGCGGCGATCCCATGGATCAGTTCCACCGTAACGAAGCTATATCCGCCGTCGCCGACGAGGGTTTCTTGGGCGAGGAAGAAGACGACGATTACGAGGACCTTTACAACGACGTCAACGTCGGCGAAGGGTTCCTTCAATCGTTGCGCAAGAACGACGATTCGGGGTTCCGAAACGACGAGGTCGAAGAAAAGAAGCCTCCGCCGCCGCCGCCGGTTCCGGATGCCGCCGGGGTTTCGATTCCGGGTGTCGGTGGCGGTGGAGGAAGCGGGGTTGTGGAATCTAGGGTTTCGGGGAGGGTTGATGGGTTTCAGAATCAAGGGTATAGAGGGAACGAGGTGGGTGCCAAAGGTGGGATTAGGATTGAATTAGGGAACCAATCTGGAAATTTGAGTGAAATTGAGGATCAGGGTGGGAATGATGGTGCTGCAATGCAGGGGATTGGACAGCAACCTCATGGTGGGGTTGTTGGGATTGTGGGAAATGAGGGTTTGGTGAGACAAGGTCAAGGTGGTGTTGGTGGTGGTGGAGGAGGAGGGAATGTTAATAGGGTTGGTGGAAATGGTGTTGGAAACAGTGTGAGTGCTGTTACTAGTGTTAATACTGGAGGAGTTGGAGGTGCTGGTGGTGGTGGTGGTGCTGCCGGTTCTGGTGGTACTATATTGTTTGTGGGTGATTTGCATTGGTGGACTACTGATGCCGAGCTTGAAACCGAGCTTAGTAGGTATGGGCCTGTGAAGGAGGTGAAGTTTTTCGATGAGAAGGCGAGTGGGAAATCAAAGGGGTATTGCCAGGTTGAGTTTTTTGATCCTTCTGCTGCAACTGCTTGCAAGGAAGGGATGAATGGGCATGTTTTTAATGGGAGGCCGTGTGTCGTTGCATTTGCTTCACCTTTTACCGTTAAGAAAATGGGGGAGGCTCAGATAAACAGAAATCAGCAGATGAACCAATCTGCTGTTCCTCAGGGAAGGAGGGGGCCTGCTGACGCAGGGGCTAAACCTGGTGGGAGTAATATTTCAACGGGTGGTAATTACCAAGGTGGAGAGGGGAATAGAGGTTATGGAAGAGGAGGAGGTAACTGGGGGAGAGGAAACAATCCTGGTATGGGGAATAGAGGGCCTGTTAATCCAATGAGGAACAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGCCATGGTGGAAATGGATTTGGACAGGGTATGGGTGGTACCCCTCCAATGTTGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCCATGGGCAGAATGGGTGGCTATGGAGGCTTTCCTGGTGCTCCGGTGCCTCCGTTTTCGGGTATTTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCAGCCTTTTTTGGAAGAGGGATGCCTGTTAATGGTATGGGGATGATGCCCGGATCAGTCATGGATGGTCCTAATATGGGAATGTGGTCGGATCCAAATATGGGTGGATGGGGTGGTGAAGAGCCCGGTGGTGGGAAGGCTGGAGAGTCCAGTTATGGGGAGGAAGCTGCTTCAGACCAACAGTATGGTGAGGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAAAAAGATAGAGGTTCGGAAAGGGACTGGTCTGGTTCTTCTGAGAGAAGGTACAGAGATGATAGAGATCAAGGATATGAGAGAGATGCATCTAGAGAAAAAGATATGGGTCATGATCATGAATGGTCTGAAAGAAGGCATCGTGATGATAGAGAAACGGGCAGAGAACGATCCCGTGACCGTGAACGATCTCGAGACCGTGATCGTGATCGTGACCGTGAAAAGGATCTCCGTGAGCGTGACAGGCACAGAGAAGATAGGGATGGGTATGCAGATCATCATAGGTTCAGAGACCGGGAAGCAGAGCACGATGATGAGTGGGAGAGGGGACGGTCATCAAGGACTCACAGCAAGTCACGATTATCGCAAGAGGAGGAACACCATTCTAGACCAAGAGATGCTGATTATGGGAAGAGGCGGCGTCTTACTTCTGAATAA 2091 0.5155 MDEGEGGYGESGDPMDQFHRNEAISAVADEGFLGEEEDDDYEDLYNDVNVGEGFLQSLRKNDDSGFRNDEVEEKKPPPPPPVPDAAGVSIPGVGGGGGSGVVESRVSGRVDGFQNQGYRGNEVGAKGGIRIELGNQSGNLSEIEDQGGNDGAAMQGIGQQPHGGVVGIVGNEGLVRQGQGGVGGGGGGGNVNRVGGNGVGNSVSAVTSVNTGGVGGAGGGGGAAGSGGTILFVGDLHWWTTDAELETELSRYGPVKEVKFFDEKASGKSKGYCQVEFFDPSAATACKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNQSAVPQGRRGPADAGAKPGGSNISTGGNYQGGEGNRGYGRGGGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGHGGNGFGQGMGGTPPMLHPQSMMNQGFDPAFGGPMGRMGGYGGFPGAPVPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPGSVMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDQQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYERDASREKDMGHDHEWSERRHRDDRETGRERSRDRERSRDRDRDRDREKDLRERDRHREDRDGYADHHRFRDREAEHDDEWERGRSSRTHSKSRLSQEEEHHSRPRDADYGKRRRLTSE* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0658 696 MobiDBLite consensus disorder prediction 62 77 - -
Gso18g0658 696 MobiDBLite consensus disorder prediction 54 103 - -
Gso18g0658 696 MobiDBLite consensus disorder prediction 545 696 - -
Gso18g0658 696 MobiDBLite consensus disorder prediction 1 37 - -
Gso18g0658 696 SMART rrm1_1 230 303 IPR000504 GO:0003723
Gso18g0658 696 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 695 IPR034772 -
Gso18g0658 696 CDD RRM_CFIm68_CFIm59 231 304 - -
Gso18g0658 696 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 307 IPR000504 GO:0003723
Gso18g0658 696 MobiDBLite consensus disorder prediction 323 398 - -
Gso18g0658 696 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 300 IPR000504 GO:0003723
Gso18g0658 696 MobiDBLite consensus disorder prediction 500 696 - -
Gso18g0658 696 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 695 - -
Gso18g0658 696 Gene3D - 223 375 IPR012677 -
Gso18g0658 696 SUPERFAMILY RNA-binding domain, RBD 226 316 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0658 Gso-Chr18 7295229 7300137 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0658 202 305 Eukaryotic Initiation Factors Gene Family AT4G34110 30.769 2.81e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0658 K14398 - gmx:100813748 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0658 18 7295229 7300137 Gso8g2725 8 44945389 44951177 GST