Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0657 ATGGACGAAGGCGAGGGAGGGTACGGTGAGAGCGGCGATCCCATGGATCAGTTCCACCGTAACGAAGCTATATCCGCCGTCGCCGACGAGGGTTTCTTGGGCGAGGAAGAAGACGACGATTACGAGGACCTTTACAACGACGTCAACGTCGGCGAAGGGTTCCTTCAATCGTTGCGCAAGAACGACGATTCGGGGTTCCGAAACGACGAGGTCGAAGAAAAGAAGCCTCCGCCGCCGCCGCCGGTTCCGGATGCCGCCGGGGTTTCGATTCCGGGTGTCGGTGGCGGTGGAGGAAGCGGGGTTGTGGAATCTAGGGTTTCGGGGAGGGTTGATGGGTTTCAGAATCAAGGGTATAGAGGGAACGAGGTGGGTGCCAAAGGTGGGATTAGGATTGAATTAGGGAACCAATCTGGAAATTTGAGTGAAATTGAGGATCAGGGTGGGAATGATGGTGCTGCAATGCAGGGGATTGGACAGCAACCTCATGGTGGGGTTGTTGGGATTGTGGGAAATGAGGGTTTGGTGAGACAAGGTCAAGGTGGTGTTGGTGGTGGTGGAGGAGGAGGGAATGTTAATAGGGTTGGTGGAAATGGTGTTGGAAACAGTGTGAGTGCTGTTACTAGTGTTAATACTGGAGGAGTTGGAGGTGCTGGTGGTGGTGGTGGTGCTGCCGGTTCTGGTGGTACTATATTGTTTGTGGGTGATTTGCATTGGTGGACTACTGATGCCGAGCTTGAAACCGAGCTTAGTAGGTATGGGCCTGTGAAGGAGGTGAAGTTTTTCGATGAGAAGGCGAGTGGGAAATCAAAGGGGTATTGCCAGGTTGAGTTTTTTGACCCTTCTGCTGCAACTGCTTGCAAGGAAGGGATGAATGGGCATGTTTTTAATGGGAGGCCGTGTGTCGTTGCATTTGCTTCACCTTTTACCGTTAAGAAAATGGGGGAGGCTCAGATAAACAGAAATCAGCAGATGAACCAATCTGCTGTTCCTCAGGGAAGGAGGGGGCCTGCTGACGCAGGGGCTAAACCTGGTGGGAGTAATATTTCAACGGGTGGTAATTACCAAGGTGGAGAGGGGAATAGAGGTTATGGAAGAGGAGGAGGTAACTGGGGGAGAGGAAACAATCCTGGTATGGGGAATAGAGGGCCTGTTAATCCAATGAGGAACAGGGGTGGTGGGATGGGTGGTAGAGGTATAATGGGCCATGGTGGAAATGGATTTGGACAGGGTATGGGTGGTACCCCTCCAATGTTGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCCATGGGCAGAATGGGTGGCTATGGAGGCTTTCCTGGTGCTCCGGCGCCTCCGTTTTCGGGTATTTTGCCTTCATTCCCTGGTGTTGGAGGTGTTGGTTTGCCTGGAGTGGCACCTCATGTTAATCCAGCCTTTTTTGGAAGAGGGATGCCTGTTAATGGTATGGGGATGATGCCCGGATCAGTCATGGATGGTCCTAATATGGGAATGTGGTCGGATCCAAATATGGGTGGATGGGGTGGTGAAGAGCCCGGTGGTGGGAAGGCTGGAGAGTCCAGTTATGGGGAGGAAGCTGCTTCAGACCAACAGTATGGTGAGGTGAGTCATGATAGAGCTGGGTGGCCTATGAGGGAAAAAGATAGAGGTTCGGAAAGGGACTGGTCTGGTTCTTCTGAGAGAAGGTACAGAGATGATAGAGATCAAGGATATGAGAGAGATGCATCTAGAGAAAAAGATATGGGTCATGATCATGAATGGTCTGAAAGAAGGCATCGTGATGATAGAGAAACGGGCAGAGAACGATCCCGTGACCGTGACCGTGATCGTGAACGATCTCGAGACCGTGATCGTGACCGCGAAAAGGATCACCGTGAGCGTGACAGGCACAGAGAAGATAGGGAGAGATATGCAGATCATCATAGGTACAGAGACCGGGAAGCAGAGCACGATGATGAGTGGGAGAGGGGACGGTCATCAAGGACTCACAGCAAGTCACGATTATCGCAAGAGGAGGAACACCATTCTAGACCAAGAGATGCTGATTATGTGAAGAGGCGGCGGCTTACTTCTGAATAA 2097 0.5169 MDEGEGGYGESGDPMDQFHRNEAISAVADEGFLGEEEDDDYEDLYNDVNVGEGFLQSLRKNDDSGFRNDEVEEKKPPPPPPVPDAAGVSIPGVGGGGGSGVVESRVSGRVDGFQNQGYRGNEVGAKGGIRIELGNQSGNLSEIEDQGGNDGAAMQGIGQQPHGGVVGIVGNEGLVRQGQGGVGGGGGGGNVNRVGGNGVGNSVSAVTSVNTGGVGGAGGGGGAAGSGGTILFVGDLHWWTTDAELETELSRYGPVKEVKFFDEKASGKSKGYCQVEFFDPSAATACKEGMNGHVFNGRPCVVAFASPFTVKKMGEAQINRNQQMNQSAVPQGRRGPADAGAKPGGSNISTGGNYQGGEGNRGYGRGGGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGHGGNGFGQGMGGTPPMLHPQSMMNQGFDPAFGGPMGRMGGYGGFPGAPAPPFSGILPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPGSVMDGPNMGMWSDPNMGGWGGEEPGGGKAGESSYGEEAASDQQYGEVSHDRAGWPMREKDRGSERDWSGSSERRYRDDRDQGYERDASREKDMGHDHEWSERRHRDDRETGRERSRDRDRDRERSRDRDRDREKDHRERDRHREDRERYADHHRYRDREAEHDDEWERGRSSRTHSKSRLSQEEEHHSRPRDADYVKRRRLTSE* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0657 698 MobiDBLite consensus disorder prediction 545 698 - -
Gso18g0657 698 MobiDBLite consensus disorder prediction 62 77 - -
Gso18g0657 698 MobiDBLite consensus disorder prediction 54 103 - -
Gso18g0657 698 Gene3D - 223 375 IPR012677 -
Gso18g0657 698 MobiDBLite consensus disorder prediction 1 37 - -
Gso18g0657 698 SMART rrm1_1 230 303 IPR000504 GO:0003723
Gso18g0657 698 CDD RRM_CFIm68_CFIm59 231 304 - -
Gso18g0657 698 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 1 697 IPR034772 -
Gso18g0657 698 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 229 307 IPR000504 GO:0003723
Gso18g0657 698 MobiDBLite consensus disorder prediction 323 398 - -
Gso18g0657 698 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 300 IPR000504 GO:0003723
Gso18g0657 698 MobiDBLite consensus disorder prediction 500 698 - -
Gso18g0657 698 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 1 697 - -
Gso18g0657 698 SUPERFAMILY RNA-binding domain, RBD 226 316 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0657 Gso-Chr18 7275141 7279751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0657 202 305 Eukaryotic Initiation Factors Gene Family AT4G34110 30.769 2.83e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0657 K14398 - gmx:100811056 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0657 18 7275141 7279751 Gso8g2726 8 44959695 44965857 GST