Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0638 ATGGCCATTTCCACGGCTAAGGGTTATAGTGATCTTCAAGAGAGAAAGAAAATAAAAGCTCCTGCAGTTCCTATTGTTCTTGTTGTTGTTGCTGCTCCTGCCCCTACTATTAAGCTTCCTACATGTGGGTGGTTTCAAGTTCCTTTCCTTCGGAGAATTGTCATTCCTGCTCCACCTGCTCGCGCTGCTTGGGTTCCTTCCCCTCAAGGTGTTGCAAAGTCACTGGATGAGATATTCAATGGGATTTCATTTGATGAGGTGAAGGTGCCGAGAATCTACCCATGGCCACACCACTTGCTGCCATATAATTTGGAGTCCAATCACCTCATGTTATCCCATCACTCCAATGACTTATCCCGGTCAGTTTGTCTCAATAAGTACATGCGTCGGACAAAAGAAGAACAAAGGTTATTTCTCATTGGGCTTGAGATATGTGGTGAGGGAAATTGGAAAGACATTTCACAACTATTTGTTCTATCAAAAACTCCAACTCAAGTTGCAAGCCATGCTAAAAAATACTTCCAACACAAGAATACCCCAAAGAAAGTGAGAAAAAGAAGAAGCATCCATGACACAACCTCAGAAGAAGACATTGACATGATTGTTACTTCTCACATTAATCAATATAATTGGGTTCCTCCTCCAACTTTTGCAGTGCAGCCACATGAAATGCAACAAACAAAACATATACAACAATTCGACTCTTATAACCCATCTCATCAAATGGGTGGATTCAAAAATTTTAATGAGGGCCATCACCCAAATGAGCTTGATCTTGTTGTGAAACCATTCATACACAATATGCCTCATTAA 813 0.4096 MAISTAKGYSDLQERKKIKAPAVPIVLVVVAAPAPTIKLPTCGWFQVPFLRRIVIPAPPARAAWVPSPQGVAKSLDEIFNGISFDEVKVPRIYPWPHHLLPYNLESNHLMLSHHSNDLSRSVCLNKYMRRTKEEQRLFLIGLEICGEGNWKDISQLFVLSKTPTQVASHAKKYFQHKNTPKKVRKRRSIHDTTSEEDIDMIVTSHINQYNWVPPPTFAVQPHEMQQTKHIQQFDSYNPSHQMGGFKNFNEGHHPNELDLVVKPFIHNMPH* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0638 270 Gene3D - 129 179 - -
Gso18g0638 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 131 178 IPR017930 -
Gso18g0638 270 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 68 237 - -
Gso18g0638 270 Pfam Myb-like DNA-binding domain 131 173 IPR001005 -
Gso18g0638 270 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 68 237 IPR043363 -
Gso18g0638 270 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 128 177 IPR006447 GO:0003677
Gso18g0638 270 CDD SANT 131 174 IPR001005 -
Gso18g0638 270 SUPERFAMILY Homeodomain-like 126 177 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0638 Gso-Chr18 7055706 7059161 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso18g0638 Myb_DNA-binding 2.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0638 - - gsj:114396841 536.569