Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0633 ATGGCTTCATTTCCTTCAAATTTTGCATTGGAACATAGCATGGCTAGTGTACAAAATAGTCACTCTCCTGCTTCCTCCCCTTCTTTCATGACTAGAGTGGCCATGAGAATATCTAGATCAAGATGGTTCACCTTCTTGAGAAGAGTATTCCATTACCAAAATGGACCGAGATCCGATCTCGGCTCCAACCCTTTCAATTCCAGCACTTGGATGATGCTGGAGTTGATTGCTTTGTTGGTCCAGATAACAAGCACAACATTCACTTTGGCCATTTCAAAGAGTGAGAAGCCAATTTGGCCTATGAGGGTGTGGATAGCAGGTTATGATATTGGTTGTGTCCTTAATCTTCTTCTACTTTGTGGCCGCTACCATCAACTTCATGTCACTCAAGGGAATAACGCTCTTACCCTCTCTGAATTGGAGCAGCAGAGAAACAATGAAGAATCAAGTGTGTACAGGAGCTCACATTTGATAGACAAATGCCGTAGTTCACTAGAGCTTTTCTTTGCCATATGGTTCGTGATGGGCAATGTATGGGCCTTTGACTCACGTTTTGGGTCCTTCCCACAAGCTCCAAAACTCCAAGTGCTCTGCATCATCTTGCTTTCTTGGAATGCAATATGCTACTCTTTCCCTTTCCTACTGTTTTTGCTTTTGTGTTGTTGTGTGCCACTAATGAGCACCCTCCTTGGATACAACATGAGCATGGGGTCCTCTGCTAGAGGGGCATCTGAAGATCAAATCTCACAACTCCCAAGTTGGAGATATAAAGGGGTTCACACCAACTTGGACCTTGGCAATGACTCTCAAAGCAGTGAAAGATTGATCAATGAAGATCCAGAATGTTGCATTTGCTTGGCCAAATACAAAGACAAAGAAGAAGTTAGGCAATTACCCTGTTCCCATTTGTTCCACCTAAAATGTGTGGATCAATGGTTAAGAATTATATCATGCTGCCCTCTTTGCAAACAAGGATTACAAAGGTAG 987 0.4296 MASFPSNFALEHSMASVQNSHSPASSPSFMTRVAMRISRSRWFTFLRRVFHYQNGPRSDLGSNPFNSSTWMMLELIALLVQITSTTFTLAISKSEKPIWPMRVWIAGYDIGCVLNLLLLCGRYHQLHVTQGNNALTLSELEQQRNNEESSVYRSSHLIDKCRSSLELFFAIWFVMGNVWAFDSRFGSFPQAPKLQVLCIILLSWNAICYSFPFLLFLLLCCCVPLMSTLLGYNMSMGSSARGASEDQISQLPSWRYKGVHTNLDLGNDSQSSERLINEDPECCICLAKYKDKEEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLQR* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0633 328 SMART ring_2 282 322 IPR001841 -
Gso18g0633 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 327 IPR013083 -
Gso18g0633 328 SUPERFAMILY RING/U-box 273 326 - -
Gso18g0633 328 Pfam RING-like zinc finger 281 309 IPR001841 -
Gso18g0633 328 Coils Coil 323 328 - -
Gso18g0633 328 CDD RING-H2_RNF111_like 280 323 - -
Gso18g0633 328 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 14 327 - -
Gso18g0633 328 ProSiteProfiles Zinc finger RING-type profile. 282 323 IPR001841 -
Gso18g0633 328 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 14 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0633 Gso-Chr18 6999518 7003467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0633 29 326 C3H Transcription Factor Family AT4G26580 68.121 9.96e-143 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0633 - - gmx:100818715 667.151