Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0626 ATGCCTGGAAGCTTAAGGAATCTGTCACTTTCTCCCAAAATCTTCTCCTTCACCTTGCTTCTCTCATTAAACTCCCTTCTCTTTTTCCCATGTTGTTACTCCCTTGATGAGCAAGGCCAAGCTCTTATAGCATGGAAAAACAGTTTAAACATCACTTCAGATGTGTTAGCATCATGGAACCCTTCAGCCTCAAGCCCATGCAACTGGTTTGGGGTGTATTGCAACTCACAAGGAGAAGTGATAGAGATAAGCCTGAAGTCAGTGAACTTGCAAGGCTCATTGCCTTCAAATTTTCAACCTCTAAGGTCCTTGAAGATTCTTGTCCTCTCATCAACCAACCTCACAGGAAGTATACCAAAAGAGATTGGAGACTATGTAGAGCTCATCTTTGTTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGCCTAAGGAAACTGCAGAGTTTGTCTCTCCATACAAACTTCCTCCAAGGCAACATTCCTTCCAACATTGGCAATCTAACAAGCCTTGTGAACTTGACACTCTATGACAACCACCTCAGTGGTGAAATTCCAAAGAGCATTGGCTCCTTAAGAAAGCTCCAAGTCTTCAGAGCAGGTGGAAACAAGAATCTCAAGGGTGAGATCCCATGGGAGATTGGAAGCTGCACCAACTTGGTCATGCTAGGCCTTGCAGAAACCAGCATTTCAGGAAGCCTTCCTTATTCAATCAAAATGCTGAAAAATATCAAGACCATAGCCATATACACAACTCTATTGTCAGGCCCCATTCCAGAAGAAATTGGCAATTGCAGTGAGTTGCAGAACCTGTACTTGCATCAGAACTCTATCTCAGGCTCAATACCAAGCCAAATTGGAGAACTCAGCAAGCTTAAGAGCCTGCTTCTGTGGCAAAACAATATAGTTGGAACAATCCCAGAAGAGCTTGGAAGCTGCACAGAGATCAAAGTCATAGACTTATCAGAAAACCTTCTCACAGGTAGCATACCAAGGAGCTTTGGCAACCTTTCAAATCTCCAAGAGCTTCAACTAAGTGTCAATCAGCTCTCAGGTATAATCCCTCCTGAGATTTCAAATTGCACTTCTTTGAATCAACTGGAACTTGACAACAATGCTCTCTCTGGTGAGATTCCTGATCTTATTGGCAACATGAAAGACTTAACTCTTTTCTTTGCATGGAAGAATAAGTTAACAGGAAACATTCCAGATAGTCTTTCTGAGTGCCAAGAACTTGAGGCAATTGATCTCTCTTACAACAACTTGATTGGTCCAATACCCAAACAACTATTTGGGTTGAGGAACCTCACCAAACTGCTGCTTCTTTCCAATGATTTGTCAGGCTTTATACCACCTGATATAGGAAATTGCACAAGCCTCTACAGGCTGAGGTTGAATCACAATAGATTAGCAGGTCACATACCACCAGAGATTGGCAACTTGAAGAGTTTGAACTTTATGGACTTAAGCAGCAATCATCTTTATGGGGAGATTCCTCCAACACTATCAGGATGCCAGAATCTTGAGTTTCTAGACCTTCATTCCAACAGTCTCACTGGTTCTGTTTCAGATTCTCTTCCCAAAAGCCTTCAGTTGATTGACTTGTCAGACAACAGACTAACTGGTGCATTGAGTCACACCATTGGTTCACTGGTTGAGTTAACCAAACTCAACCTTGGAAACAATCAGCTGAGTGGAAGAATCCCATCAGAGATCTTGTCTTGCTCTAAGCTACAACTTCTGGACCTGGGAAGTAATAGTTTCAATGGAGAAATTCCCAATGAAGTTGGTCTAATTCCTTCACTGGCAATCTCTCTCAACCTTAGCTGCAACCAGTTCTCTGGTAAAATTCCTCCCCAGCTCTCTAGTCTTACCAAACTAGGAGTTCTTGATCTCTCACATAACAAGCTCTCAGGGAATTTAGATGCTCTTTCTGACCTTGAGAATCTTGTTTCCTTAAATGTTTCCTTCAATGGCCTCTCTGGTGAGTTGCCCAACACCCTATTTTTTCACAATCTTCCTCTTAGTGATCTTGCTGAAAATCAAGGTCTCTACATTGCTGGAGGTGTTGTAACTCCTGGTGACAAAGGTCATGCTAGATCAGCTATGAAGTTCATTATGTCCATTCTCTTAAGCACCAGTGCAGTACTTGTTCTTCTCACAATCTATGTCTTAGTCAGAACTCACATGGCCAGCAAGGTGCTCATGGAAAATGAAACTTGGGAGATGACTTTGTATCAGAAGCTTGATTTCTCCATTGATGACATTGTTATGAATTTGACATCAGCCAATGTGATTGGCACTGGAAGCTCAGGAGTTGTGTACAAAGTCACAATTCCAAATGGTGAAACACTGGCTGTTAAGAAGATGTGGTCATCAGAAGAGTCTGGAGCATTCAATTCTGAGATTCAAACATTGGGGTCAATTAGGCACAAGAACATCATCAGGCTTCTTGGATGGGGATCAAACAAGAACCTGAAGCTGCTCTTTTATGACTATCTCCCTAATGGAAGTCTGAGCTCATTGCTCTATGGTTCAGGAAAGGGAAAAGCTGAATGGGAGACAAGATATGATGTTATATTAGGTGTGGCTCATGCACTCGCATATTTGCACCATGATTGTTTGCCTGCTATTATTCATGGAGATGTCAAAGCCATGAATGTGTTACTAGGTCCTGGATATCAACCTTACCTTGCTGACTTTGGCCTGGCAAGAACTGCAACTGAAAATGGTGACAATTCTGATTCCAAGCCACTTCAAAGACACTACCTTGCTGGTTCATATGGATACATGGCTCCTGAGCATGCATCACTGCAGCCTATAACTGAAAAGAGTGATGTGTACAGTTTTGGCATGGTTCTACTTGAGGTTCTCACAGGAAGGCACCCATTAGACCCAACTCTACCAGGGGGTGCACACTTGGTTCAGTGGGTTAGGAACCACTTGTCTAGCAAAGGAGACCCTTCTGACATTCTTGACACAAAGCTTAGAGGGAGGGCTGATCCCACCATGCATGAAATGCTACAAACTCTAGCAGTGTCATTTCTATGTGTAAGCAATAAAGCTGATGAGAGGCCAACAATGAAGGATGTTGTTGCAATGCTAAAGGAAATTAGACCCCTTGAGACCTCAAGGGCAGACCCTAATGTATTGAAGGGAGGTTTAACAGCACATAGTTCACCACCACCTCCTAAGAATGTGGTCTCACATGGATCTTCTACATGTTCCTACAATTTCTCGGATAACTCAATCAATTAA 3273 0.4259 MPGSLRNLSLSPKIFSFTLLLSLNSLLFFPCCYSLDEQGQALIAWKNSLNITSDVLASWNPSASSPCNWFGVYCNSQGEVIEISLKSVNLQGSLPSNFQPLRSLKILVLSSTNLTGSIPKEIGDYVELIFVDLSGNSLFGEIPEEICSLRKLQSLSLHTNFLQGNIPSNIGNLTSLVNLTLYDNHLSGEIPKSIGSLRKLQVFRAGGNKNLKGEIPWEIGSCTNLVMLGLAETSISGSLPYSIKMLKNIKTIAIYTTLLSGPIPEEIGNCSELQNLYLHQNSISGSIPSQIGELSKLKSLLLWQNNIVGTIPEELGSCTEIKVIDLSENLLTGSIPRSFGNLSNLQELQLSVNQLSGIIPPEISNCTSLNQLELDNNALSGEIPDLIGNMKDLTLFFAWKNKLTGNIPDSLSECQELEAIDLSYNNLIGPIPKQLFGLRNLTKLLLLSNDLSGFIPPDIGNCTSLYRLRLNHNRLAGHIPPEIGNLKSLNFMDLSSNHLYGEIPPTLSGCQNLEFLDLHSNSLTGSVSDSLPKSLQLIDLSDNRLTGALSHTIGSLVELTKLNLGNNQLSGRIPSEILSCSKLQLLDLGSNSFNGEIPNEVGLIPSLAISLNLSCNQFSGKIPPQLSSLTKLGVLDLSHNKLSGNLDALSDLENLVSLNVSFNGLSGELPNTLFFHNLPLSDLAENQGLYIAGGVVTPGDKGHARSAMKFIMSILLSTSAVLVLLTIYVLVRTHMASKVLMENETWEMTLYQKLDFSIDDIVMNLTSANVIGTGSSGVVYKVTIPNGETLAVKKMWSSEESGAFNSEIQTLGSIRHKNIIRLLGWGSNKNLKLLFYDYLPNGSLSSLLYGSGKGKAEWETRYDVILGVAHALAYLHHDCLPAIIHGDVKAMNVLLGPGYQPYLADFGLARTATENGDNSDSKPLQRHYLAGSYGYMAPEHASLQPITEKSDVYSFGMVLLEVLTGRHPLDPTLPGGAHLVQWVRNHLSSKGDPSDILDTKLRGRADPTMHEMLQTLAVSFLCVSNKADERPTMKDVVAMLKEIRPLETSRADPNVLKGGLTAHSSPPPPKNVVSHGSSTCSYNFSDNSIN* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0626 1090 SMART LRR_typ_2 556 580 IPR003591 -
Gso18g0626 1090 SMART LRR_typ_2 173 197 IPR003591 -
Gso18g0626 1090 SMART LRR_typ_2 652 676 IPR003591 -
Gso18g0626 1090 SMART LRR_typ_2 149 172 IPR003591 -
Gso18g0626 1090 SMART LRR_typ_2 294 318 IPR003591 -
Gso18g0626 1090 SMART LRR_typ_2 101 125 IPR003591 -
Gso18g0626 1090 SMART LRR_typ_2 438 462 IPR003591 -
Gso18g0626 1090 SMART LRR_typ_2 486 510 IPR003591 -
Gso18g0626 1090 SMART LRR_typ_2 629 651 IPR003591 -
Gso18g0626 1090 SMART LRR_typ_2 342 366 IPR003591 -
Gso18g0626 1090 ProSiteProfiles Leucine-rich repeat profile. 631 653 IPR001611 GO:0005515
Gso18g0626 1090 Gene3D Phosphorylase Kinase; domain 1 730 838 - -
Gso18g0626 1090 Gene3D Ribonuclease Inhibitor 35 192 IPR032675 -
Gso18g0626 1090 Gene3D Ribonuclease Inhibitor 333 431 IPR032675 -
Gso18g0626 1090 ProSiteProfiles Protein kinase domain profile. 765 1047 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0626 1090 Gene3D Ribonuclease Inhibitor 432 693 IPR032675 -
Gso18g0626 1090 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515
Gso18g0626 1090 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 1056 - -
Gso18g0626 1090 Pfam Protein kinase domain 768 1037 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0626 1090 ProSitePatterns Serine/Threonine protein kinases active-site signature. 883 895 IPR008271 GO:0004672|GO:0006468
Gso18g0626 1090 SUPERFAMILY RNI-like 83 389 - -
Gso18g0626 1090 SUPERFAMILY L domain-like 610 682 - -
Gso18g0626 1090 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 1056 - -
Gso18g0626 1090 SUPERFAMILY Protein kinase-like (PK-like) 764 1040 IPR011009 -
Gso18g0626 1090 SMART serkin_6 765 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0626 1090 Gene3D Ribonuclease Inhibitor 193 332 IPR032675 -
Gso18g0626 1090 ProSitePatterns Protein kinases ATP-binding region signature. 771 794 IPR017441 GO:0005524
Gso18g0626 1090 PRINTS Leucine-rich repeat signature 535 548 - -
Gso18g0626 1090 PRINTS Leucine-rich repeat signature 629 642 - -
Gso18g0626 1090 Pfam Leucine rich repeat N-terminal domain 36 75 IPR013210 -
Gso18g0626 1090 MobiDBLite consensus disorder prediction 1050 1078 - -
Gso18g0626 1090 Gene3D Transferase(Phosphotransferase) domain 1 839 1055 - -
Gso18g0626 1090 SUPERFAMILY RNI-like 287 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0626 Gso-Chr18 6923861 6927849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0626 32 1089 Receptor kinase-like Gene Family AT5G56040 68.007 0.0 1442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso18g0626 Pkinase 9e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0626 - - gmx:100802880 2116.66