Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0624 ATGGATACTAAGTCGGCTGTAGAATTAATGGAGTCTTCCGCAGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGCTAGCATAGAACAACCAACAACCTCAGAAACTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAACAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACAATAACTTGACGGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGATGCTTTTGATACTGAGCAATTGCTACGCGTTATGGACAAGTTGAAGCATGGCGAAGCTGTAGATATTCCAAAGTATGATTTTAAGAGTTACAAGAGTGATGACATGTTAAGAAGGGTGAACCCTTCAGATGTTATAATTTTAGAAGGCATCCTTGTTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGTTTGGCAAGAAGGATTAGGCGTGACACTACTGAGAAGGGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTTGGTCAGCATGACCTGTGTAAAATATATCCTAATTTGTATGTCATTCAGTCAACTTTTCAGATACGGGGTATGCATACCCTGATACGTGATGCCAAGACAACAAAGCATGATTTTGTATTTTACTCTGATCGATTGATTCGATTGGTTGTGGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAGCAAGTAATCACTCCTACTGGTTCTGTATACACTGGTGTTGATTTTTGTAAAAGGTTGTGTGGTGTCTCTGTTATCAGAAGTGGGGAGAGTATGGAGAATGCTTTGAGAGCATGCTGTAAAGGTATCAAGATTGGGAAAATTTTAATTCACAGAGAAGGTGACAATGGTCAGCAGCTAATATATGAAAAGTTGCCAAATGATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTGCACCTAAAGGTGTGCATGTGGTATGCAAAAGTTTTCCAAGAATAAAGATAGTAACATCTGAGATTGAGATTGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGCGAGTTTGGAGATCGGTACTTTGGAACAGATGATGATGATGAGCAAGTGGTAGTTTCTTCCCAGTAG 1434 0.394 MDTKSAVELMESSAEVHFSGFHMDGFEQRKASIEQPTTSETDMYKQPFVIGVAGGAASGKTTVCDMIIQQLHDQRVVLVNQDSFYNNLTEEELTRVQDYNFDHPDAFDTEQLLRVMDKLKHGEAVDIPKYDFKSYKSDDMLRRVNPSDVIILEGILVFHDPRVRELMNMKIFVDTDADVRLARRIRRDTTEKGRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDAKTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIKKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDEQVVVSSQ* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0624 477 Gene3D - 250 465 IPR029057 -
Gso18g0624 477 PRINTS Uridine kinase signature 47 64 - -
Gso18g0624 477 PRINTS Uridine kinase signature 77 88 - -
Gso18g0624 477 PRINTS Uridine kinase signature 122 137 - -
Gso18g0624 477 PRINTS Uridine kinase signature 178 188 - -
Gso18g0624 477 PRINTS Uridine kinase signature 192 203 - -
Gso18g0624 477 PRINTS Uridine kinase signature 214 227 - -
Gso18g0624 477 Gene3D - 43 249 IPR027417 -
Gso18g0624 477 PANTHER URIDINE KINASE 15 468 - -
Gso18g0624 477 PANTHER URIDINE KINASE 15 468 - -
Gso18g0624 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 239 IPR027417 -
Gso18g0624 477 Pfam Phosphoribulokinase / Uridine kinase family 49 234 IPR006083 GO:0005524|GO:0016301
Gso18g0624 477 Pfam Uracil phosphoribosyltransferase 264 465 - -
Gso18g0624 477 SUPERFAMILY PRTase-like 249 466 IPR029057 -
Gso18g0624 477 CDD PRTases_typeI 323 438 IPR000836 -
Gso18g0624 477 CDD UMPK 49 246 IPR000764 -
Gso18g0624 477 TIGRFAM udk: uridine kinase 46 246 IPR000764 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0624 Gso-Chr18 6844494 6852275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0624 1 468 PRT Gene Family AT4G26510 83.404 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0624 K00876 - gmx:100527893 924.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0624 18 6844494 6852275 Gso8g2756 8 45276719 45284145 GST
Gso18g0624 18 6844494 6852275 Gso14g0099 14 863496 871907 PCT
Gso18g0624 18 6844494 6852275 Gso2g2573 2 49989502 49997457 PCT
Gso14g0099 14 863496 871907 Gso18g0624 18 6844494 6852275 PCT
Gso2g2573 2 49989502 49997457 Gso18g0624 18 6844494 6852275 PCT