Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0618 ATGAAAATCACTGTCATGACTGCTGATGAACAAATCATCACGTTAGATGTGGATCCCCACGAATCTGTGGAAAACGTCAAAGCATTGCTCGAGGTTGAGACAAGTGTGCCTCTTCAACAACAGCAGCTTCTGTTTAATGGGAAGGAAGTGAGGAATTCTGAGAAGTTGAGTGCTCTTGGTGTTAAGGATGATGATTTGCTAATGATGGTGTCTGGTGCTGGCGCTACTGCTTCTAGTGGATCTACGAATGATTTGAGCTTAAATGCTGATGGATCTGCTGTCAACCCTGGTTCTTTCCAGCAGCACATTAGACATGATTCTAATTTGATGAGTCAGCTCTTTCAGAGTGATCCAGAGTTGGCACAAGCTATTTTAGGGAATGATCTGAACAAATTGCAGGAAGTTTTACGATTGCGTCATCACCAAAGAGATGAATTAAAGCGTCAGAAGGAAGAAGAGCTTGCTCTTCTTTATGCTGATCCTTTTGATGTTGAAGCACAAAAGAAGATTGAAGCTGCCATCCGCCAGAAAGGGATTGATGAAAATTGGGCTGCTGCATTAGAACATAATCCTGAAGCTTTTGCTAGAGTGGTCATGTTGTATGTTGATATGGAGGTTAATGGTGTCCCATTGAAGGCATTTGTGGATAGTGGAGCTCAGTCTACCATTATATCAAAAAGCTGTGCTGAGCGTCTTGGATTGTTGAGACTTTTAGATCAGCGTTACAGAGGAATTGCTCATGGAGTTGGCCAATCAGAAATATTGGGTCGTATACATGTAGCTCCAATCAAGATTGGGAGTATATTTTACCCTTGCTCATTCTTGGTGCTGGATTCTCCCAATATGGAGTTTCTCTTTGGACTGGATATGCTCCGAAAGCACCAGTGTATAATTGATTTGAAAGAAAATGTTTTGCGAGTTGGTGGAGGAGAAGTTTCTGTACCATTTTTGCAAGAGAAAGACATACCATCTCGGTTTCTAGACGAGGAAAAGTATGCTAAGGAAGCTTCAGGCTCTGGTGGTCAAGTTGCATCAGGCAGCAATAATCCATCAACAGGAGGCCACTCTTCTGGTGGAGCTTCTGGTGACAGGACTAAGGATTCTGAGTTTGAAGCCAAAGTTGCAAAGCTTGTTGAATTGGGATTTGAAAGAAATGCAGTTATACAAGCTCTTCAATTATTCAATGGCAATGAGGAACAGGCAGCTGGGTTTCTTTTTGGGGGCTAG 1227 0.4246 MKITVMTADEQIITLDVDPHESVENVKALLEVETSVPLQQQQLLFNGKEVRNSEKLSALGVKDDDLLMMVSGAGATASSGSTNDLSLNADGSAVNPGSFQQHIRHDSNLMSQLFQSDPELAQAILGNDLNKLQEVLRLRHHQRDELKRQKEEELALLYADPFDVEAQKKIEAAIRQKGIDENWAAALEHNPEAFARVVMLYVDMEVNGVPLKAFVDSGAQSTIISKSCAERLGLLRLLDQRYRGIAHGVGQSEILGRIHVAPIKIGSIFYPCSFLVLDSPNMEFLFGLDMLRKHQCIIDLKENVLRVGGGEVSVPFLQEKDIPSRFLDEEKYAKEASGSGGQVASGSNNPSTGGHSSGGASGDRTKDSEFEAKVAKLVELGFERNAVIQALQLFNGNEEQAAGFLFGG* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0618 408 CDD UBA_scDdi1_like 371 406 - -
Gso18g0618 408 PRINTS Ubiquitin signature 11 31 IPR019956 -
Gso18g0618 408 PRINTS Ubiquitin signature 32 52 IPR019956 -
Gso18g0618 408 PANTHER ASPARTYL PROTEASE DDI-RELATED 1 406 - -
Gso18g0618 408 SUPERFAMILY Acid proteases 185 300 IPR021109 -
Gso18g0618 408 Gene3D - 1 84 - -
Gso18g0618 408 Pfam UBA/TS-N domain 371 404 IPR015940 -
Gso18g0618 408 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Gso18g0618 408 PANTHER AT13091P 1 406 - -
Gso18g0618 408 CDD RP_DDI 184 307 IPR019103 GO:0004190|GO:0006508
Gso18g0618 408 Pfam Aspartyl protease 177 299 IPR019103 GO:0004190|GO:0006508
Gso18g0618 408 CDD Ubl_Ddi1_like 1 70 IPR033882 -
Gso18g0618 408 Coils Coil 132 152 - -
Gso18g0618 408 Gene3D Acid Proteases 178 324 IPR021109 -
Gso18g0618 408 SMART uba_6 370 407 IPR015940 -
Gso18g0618 408 Gene3D - 341 408 - -
Gso18g0618 408 SUPERFAMILY UBA-like 356 408 IPR009060 GO:0005515
Gso18g0618 408 MobiDBLite consensus disorder prediction 337 366 - -
Gso18g0618 408 MobiDBLite consensus disorder prediction 340 361 - -
Gso18g0618 408 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Gso18g0618 408 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Gso18g0618 408 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 365 408 IPR015940 -
Gso18g0618 408 SMART ubq_7 1 72 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0618 Gso-Chr18 6763847 6772199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0618 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 2.24e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0618 K11885 - gmx:100782198 752.666
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0618 18 6763847 6772199 Gso8g2790 8 45658231 45676361 GST