Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0611 ATGGGACGTATTCCATGTTGTGAGAAGGACAACGTGAAAAGAGGACAGTGGACACCTGAGGAAGATAACAAGCTCTCCTCCTACATTGCTCAACACGGCACTCGCAACTGGCGTCTCATTCCCAAGAATGCTGGCCTCCAGAGATGTGGAAAGAGCTGCAGATTAAGGTGGACTAATTACCTTCGTCCTGATCTCAAACATGGCCAATTCTCGGATTCGGAAGAGCAAACCATTGTGAAGCTTCACTCAGTTTTTGGTAACAGATGGTCACTGATAGCAGCCCAGCTGCCAGGACGCACTGACAATGATGTCAAAAACCACTGGAACACCAAGCTGAAGAAGAAACTGTCAGGCATGGGTATAGACCCTGTCACCCACAAGCCATTTTCCCATCTAATGGCTGAAATTGCTACAACATTGGCACCCCCACAAGCAGCTCACCTTGCTGAAGCGGCCCTTGGCTGTTTCAAAGATGAGGTGCTCCACCTTCTTACCAAGAAGCCAATTAACTTCCACCAGGGGCAACATTCCACTGCAGCATTGGAAAATAACTTCACAGATTACATTAATTGTAAGCCAGATGAAAAGGACACAGCTATTGAGAAGATTAAGTTTGACCTATCAAAGGCCATACAACATGAACCAGAAATGATGCCCGCAAACAAACCTTGGGACTCCAATGCAACTACATCTGCAAATTTTGTGATGCCATACGGTGTTTTTCCTACAATGCCTGGGTTTCAATTGTCTCCGGCAACTTTTGGCAAAGGGGATGATGCATCTCCATGGAGCCAAAGTGTATGTACTGGAAGCACATGCACTGTCATGGATCAGCAAAGCCAGTTACATGAAAAACTTGAAGACGAAATCGGTGATGATTCTGAGGCTACGAAGGAGATTAGAAATTTATCCAATATATTCAACTCAGATTGTGTTGTGTGGGATCTACCAACGGATGATTTGATTAACCCCATGGTCTAA 981 0.4526 MGRIPCCEKDNVKRGQWTPEEDNKLSSYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYLRPDLKHGQFSDSEEQTIVKLHSVFGNRWSLIAAQLPGRTDNDVKNHWNTKLKKKLSGMGIDPVTHKPFSHLMAEIATTLAPPQAAHLAEAALGCFKDEVLHLLTKKPINFHQGQHSTAALENNFTDYINCKPDEKDTAIEKIKFDLSKAIQHEPEMMPANKPWDSNATTSANFVMPYGVFPTMPGFQLSPATFGKGDDASPWSQSVCTGSTCTVMDQQSQLHEKLEDEIGDDSEATKEIRNLSNIFNSDCVVWDLPTDDLINPMV* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0611 326 Gene3D - 14 66 - -
Gso18g0611 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gso18g0611 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Gso18g0611 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gso18g0611 326 CDD SANT 17 61 IPR001005 -
Gso18g0611 326 CDD SANT 70 112 IPR001005 -
Gso18g0611 326 PANTHER TRANSCRIPTION FACTOR MYB80 1 326 - -
Gso18g0611 326 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gso18g0611 326 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gso18g0611 326 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Gso18g0611 326 PANTHER F14D16.11-RELATED 1 326 - -
Gso18g0611 326 Gene3D - 69 128 - -
Gso18g0611 326 SMART sant 66 114 IPR001005 -
Gso18g0611 326 SMART sant 13 63 IPR001005 -
Gso18g0611 326 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0611 Gso-Chr18 6657884 6659033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0611 1 326 MYB Transcription Factor Family AT5G56110 57.396 1.19e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g0611 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0611 K09422 - gmx:100800764 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0611 18 6657884 6659033 Gso8g2782 8 45571726 45572784 GST