Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0606 ATGCAGTCCAAGTCTGAAACTGCAAATCGACTGAGATCAGATCCTCATTCCTTTCAACCTGGCAGTGTTTATTCTGAGCCTTGGTGGCGTGGTATTGGGTACAATCCTGTGGCCCAGACAATGGCTGGGGCAAATGCATCCAATTCATCGTCTCTTGAATGCCCTAATGGTGATTCTGAATCCAATGAAGAAGGTCAGTCTTTGTCCAATAGCGGGATGAATGAGGAAGATGATGATGCCACTAAGGATTCACAGCCTGCTGCTCCTAATGGAACAGGAAATTATGGGCAAGAACAGCAAGGGATGCAGCATACTGCATCATCTGCACCCTCCATGCGTGAAGAATGCCTTACTCAGACACCACAGCTGGAACTTGTCGGTCATTCAATTGCATGTGCTACAAATCCTTATCAGGATCCGTATTATGGGGGCATGATGGCAGCTTATGGTCACCAACAGTTGGGATATGCTCCTTTTATAGGAATGCCTCATGCCAGAATGCCTTTGCCCCTTGAGATGGCTCAAGAACCTGTGTATGTGAATGCCAAACAGTACCAAGGAATTCTGAGGCGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAGGAAGCTCATAAAATCTAGAAAGCCATATCTTCATGAATCTAGGCATCAGCATGCTATGAGAAGGGCAAGGGGTACTGGAGGACGATTTGCAAAGAAAACTGACGGTGAGGGCTCAAACCACTCAGGCAAGGAAAAGGATAATGGTACTGATTCTGTCCTATCATCACAATCAATTAGTTCATCTGGTTCTGAACCTTTACATTCTGACTCTGCCGAAACCTGGAATTCTCCTAACATGCAACAAGATGCAAGAGCATCAAAAGTGCACAACAGGTTCAAAGCACCCTGTTACCAAAATGGCAGTGGCTCCTACCATAATCATAATGGATTGCAATCTTCAGTGTACCATTCATCCCCAGGTGAAAGACTGGAGGAAAGGGATTGTTCGGGTCAGCAACTGAACCACAATTGA 1017 0.4582 MQSKSETANRLRSDPHSFQPGSVYSEPWWRGIGYNPVAQTMAGANASNSSSLECPNGDSESNEEGQSLSNSGMNEEDDDATKDSQPAAPNGTGNYGQEQQGMQHTASSAPSMREECLTQTPQLELVGHSIACATNPYQDPYYGGMMAAYGHQQLGYAPFIGMPHARMPLPLEMAQEPVYVNAKQYQGILRRRQARAKAELERKLIKSRKPYLHESRHQHAMRRARGTGGRFAKKTDGEGSNHSGKEKDNGTDSVLSSQSISSSGSEPLHSDSAETWNSPNMQQDARASKVHNRFKAPCYQNGSGSYHNHNGLQSSVYHSSPGERLEERDCSGQQLNHN* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0606 338 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-9 31 335 - -
Gso18g0606 338 SMART cbf3 173 234 IPR001289 GO:0003700|GO:0006355
Gso18g0606 338 MobiDBLite consensus disorder prediction 1 20 - -
Gso18g0606 338 ProSiteProfiles NF-YA/HAP2 family profile. 174 234 IPR001289 GO:0003700|GO:0006355
Gso18g0606 338 PRINTS CCAAT-binding transcription factor subunit B signature 177 199 IPR001289 GO:0003700|GO:0006355
Gso18g0606 338 PRINTS CCAAT-binding transcription factor subunit B signature 208 231 IPR001289 GO:0003700|GO:0006355
Gso18g0606 338 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 335 IPR001289 GO:0003700|GO:0006355
Gso18g0606 338 MobiDBLite consensus disorder prediction 85 117 - -
Gso18g0606 338 Gene3D - 174 236 - -
Gso18g0606 338 MobiDBLite consensus disorder prediction 44 117 - -
Gso18g0606 338 MobiDBLite consensus disorder prediction 229 249 - -
Gso18g0606 338 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 176 231 IPR001289 GO:0003700|GO:0006355
Gso18g0606 338 MobiDBLite consensus disorder prediction 321 338 - -
Gso18g0606 338 ProSitePatterns NF-YA/HAP2 subunit signature. 179 199 IPR018362 GO:0003677|GO:0016602
Gso18g0606 338 MobiDBLite consensus disorder prediction 298 320 - -
Gso18g0606 338 MobiDBLite consensus disorder prediction 250 287 - -
Gso18g0606 338 MobiDBLite consensus disorder prediction 207 338 - -
Gso18g0606 338 MobiDBLite consensus disorder prediction 209 228 - -
Gso18g0606 338 MobiDBLite consensus disorder prediction 44 74 - -
Gso18g0606 338 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0606 Gso-Chr18 6594864 6598722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0606 16 278 CCAAT-HAP2 Transcription Factor Family AT5G12840 54.135 5.21e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gso18g0606 CBFB_NFYA 1.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0606 K08064 - gmx:100808378 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0606 18 6594864 6598722 Gso8g2776 8 45516509 45520270 GST
Gso18g0606 18 6594864 6598722 Gso14g0089 14 808562 812370 PCT
Gso18g0606 18 6594864 6598722 Gso2g2581 2 50047116 50050832 PCT
Gso14g0089 14 808562 812370 Gso18g0606 18 6594864 6598722 PCT
Gso2g2581 2 50047116 50050832 Gso18g0606 18 6594864 6598722 PCT