Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0589 ATGTCGTATTCAAGGAGATCTAGGTATTCTCCTTCTCCTTCTCCTTCTCCTTCTCCATACAAGCGATACGGTAGGTCTGTGTCCAGGTCTCTCTCAATGTCAAGATCCAGAAGCCGTTCAAGGAGTTTATCAAGAGATGCAGAAAATCCAGGAAACAATTTGTATGTGACAGGATTGTCTCCTAGGATTACCAAGAGAGAACTGGAGAAACATTTTGCTGCTGAAGGAAAAGTGATAGATGTCCATCTGGTAGTTGATCCTTGGACAAGGGAATCCCGTGGGTTTGGCTTTGTGACAATGGAGACTCTTGAGGAGGCTGAACGATGTGTAAAGTATCTGAATCGCTCTGTACTTGAAGGGCGTGTCATCACGGTGGAGAAGGCTAAAAGACGACGTGGTCGAACCCCAACGCCAGGGAGGTATCTAGGACTGAGAACTATTCGTGCTCGACGTAGCTCTCCAAGTTACTCTCCTCGTCGCTCTCCTAGCTATTCTCCCTTCAGAAGAAGCTACAGTCGCTCTCCCTATTCTTCAGACCGAAGTAGGAGTCGTTCTTACTCTCCTGACTATCAGAGGAGGAGGTCTTACTCTCCATATCACTCCAGGCGGAGGTCTTACTCTCCATTCTATAGCCGGTACAGGTCCTATTCTCGATATGATCGACACAGGTCATATTCTCGATCTCGCTCTCCGTATAGCAGGTCACCTGTCAGCATGCATGACAGATCATACTCTCCCTATGAAATACGATATGACTCGCCGGATGCGCACTCCTACAGAAGGCACCGTTACCGATCTGTTTCACGAAGTGCCTCGCCTGATGATCGTTATTATGGAAGGCACCGTTACAGGTCTGTTTCTCGGAGTGCCTCACCCAGGCCAAGGAGAAGGTCAAGGAGGAGCTACTCACGGAGTGCTACACCTGTTTCAAAGAGAAGCAACTCACGAAATGTGTCCCCCAGGTCAAGGAGGAGCCATTCAAGAAGCTCTAAGAGGAGTGGCAAATGTGAGAAACGCTACTCAAGAAGCTCGAGTGTGAATGCAAGTTCAAGATCAGTATCGAGGTCAAATACTCCAAGGTCTACCTCTCCTTCAACTTGA 1101 0.4823 MSYSRRSRYSPSPSPSPSPYKRYGRSVSRSLSMSRSRSRSRSLSRDAENPGNNLYVTGLSPRITKRELEKHFAAEGKVIDVHLVVDPWTRESRGFGFVTMETLEEAERCVKYLNRSVLEGRVITVEKAKRRRGRTPTPGRYLGLRTIRARRSSPSYSPRRSPSYSPFRRSYSRSPYSSDRSRSRSYSPDYQRRRSYSPYHSRRRSYSPFYSRYRSYSRYDRHRSYSRSRSPYSRSPVSMHDRSYSPYEIRYDSPDAHSYRRHRYRSVSRSASPDDRYYGRHRYRSVSRSASPRPRRRSRRSYSRSATPVSKRSNSRNVSPRSRRSHSRSSKRSGKCEKRYSRSSSVNASSRSVSRSNTPRSTSPST* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0589 366 MobiDBLite consensus disorder prediction 150 194 - -
Gso18g0589 366 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1 11 308 - -
Gso18g0589 366 MobiDBLite consensus disorder prediction 219 241 - -
Gso18g0589 366 MobiDBLite consensus disorder prediction 317 333 - -
Gso18g0589 366 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 54 123 IPR000504 GO:0003723
Gso18g0589 366 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 52 130 IPR000504 GO:0003723
Gso18g0589 366 SMART rrm1_1 53 126 IPR000504 GO:0003723
Gso18g0589 366 MobiDBLite consensus disorder prediction 286 302 - -
Gso18g0589 366 MobiDBLite consensus disorder prediction 128 204 - -
Gso18g0589 366 MobiDBLite consensus disorder prediction 19 38 - -
Gso18g0589 366 MobiDBLite consensus disorder prediction 1 53 - -
Gso18g0589 366 MobiDBLite consensus disorder prediction 259 366 - -
Gso18g0589 366 CDD RRM_RBMX_like 51 130 - -
Gso18g0589 366 PANTHER TRANSFORMER-2-RELATED 11 308 - -
Gso18g0589 366 SUPERFAMILY RNA-binding domain, RBD 43 154 IPR035979 GO:0003676
Gso18g0589 366 Gene3D - 4 136 IPR012677 -
Gso18g0589 366 MobiDBLite consensus disorder prediction 259 282 - -
Gso18g0589 366 MobiDBLite consensus disorder prediction 340 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0589 Gso-Chr18 6304655 6308242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0589 53 167 Eukaryotic Initiation Factors Gene Family AT2G36660 33.043 5.75e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0589 - - gmx:100808038 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0589 18 6304655 6308242 Gso8g2761 8 45371996 45375675 GST