Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0581 ATGAAAAGCATAGGAGGCGGAGGTGGTGATGGTGGTGCCATTATTCCACTTCATCATGGATGTGGAAATATAAGGGTCACTACTACTAACCCTTCCATGTGTTCAGTTGGTCCTCCTTTCACAGCCATAGAAAGGTTTTTGTGGGGACAACAGCAACAGACACAGTATAACGTAGCAAACAATGGCCATGCAAGTATTTTTGGTGGTTCAACCTACAAGTTTATGTGGCCTAATAATAGTAGTACTACTCAAGAAGTGAGCTATGCTGAACAGATCATTTTTGCAAATAATAATGAAGAGGCTCTGAATTGGACACAACAAGTGTGCTTCAAAGAAGATGGGAAGAATATTGCCAAAGTGGTGGGAAGAAGACCTAAGAAAGGGTCTTCTGTGCCCTTGATCAAAGGACAGTGGACTGATGAAGAAGACAGGAAACTGTTGAAGTTGGTGAAACAACATGGTGTAAGAAAATGGTCTCTGATAGCCGAGAAGTTGGATGGAAGGGCTGGAAAGCAGTGTCGAGAGAGATGGCATAATCATCTGCGGCCTGATATTAAGAAAGATAGTTGGAGTGAAGAAGAAGAGAGGATATTAGTAGAAACTCATGCCAAGATTGGAAACCGTTGGGCAGAGATTGCGAAGTTCATTCCCGGAAGAACAGAAAATGCAATAAAGAACCATTGGAATGCAACAAAAAGGAGGCAAAACTCAAGGAGAAAGAACAAAAGAGCAGGAACCTCAAATGGGAAGCCACAACCCTCTATTCTCCAAGACTACATCAAAAGCTTGACTCTGATCACCAGCACCACCACCTCTCCCGTGGAACAACAAATTGCACCTCAGCTCTCTAATTCTGTTACCAATAATGAAAATTCTTCACTAATGGCTGAGTCTTATGATGATGAGTTGCTATTCATGCAACAACTTTTCAAGGAGAATAATGCCAATAATGTTGAATCTCTTAAGCACTCCAAGAATATTATCAATAACTCTTCTGCAGCCTCCTTGGATTGTTATTATCATCAAACTAATTACAATGGTGGTGGTCAGCTTCTCACTGATGTCACTCAATGTGGGTTTGTTGTTCATTCCAACCCTAACACAACAAACTCACATCACAACAACATGTGCTTGGATGAGAGTCTCTTCATCTCTAGAAAGAGTACTACTCCTCATGCTCCTATCAACTACCTTGATTCCGATCATGTCTATCTCTCTCACTTGCTTAATGGAACTGCTGGTTCATCATTTTGCTATAATAATTATGGGGTTCACAACCAGAACAACATGGAGTTGCAGCTGGGGAATCAAGATTGTTTTGAGGAAAGAGGGAGATGGATATGGTAG 1347 0.4135 MKSIGGGGGDGGAIIPLHHGCGNIRVTTTNPSMCSVGPPFTAIERFLWGQQQQTQYNVANNGHASIFGGSTYKFMWPNNSSTTQEVSYAEQIIFANNNEEALNWTQQVCFKEDGKNIAKVVGRRPKKGSSVPLIKGQWTDEEDRKLLKLVKQHGVRKWSLIAEKLDGRAGKQCRERWHNHLRPDIKKDSWSEEEERILVETHAKIGNRWAEIAKFIPGRTENAIKNHWNATKRRQNSRRKNKRAGTSNGKPQPSILQDYIKSLTLITSTTTSPVEQQIAPQLSNSVTNNENSSLMAESYDDELLFMQQLFKENNANNVESLKHSKNIINNSSAASLDCYYHQTNYNGGGQLLTDVTQCGFVVHSNPNTTNSHHNNMCLDESLFISRKSTTPHAPINYLDSDHVYLSHLLNGTAGSSFCYNNYGVHNQNNMELQLGNQDCFEERGRWIW* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0581 448 ProSiteProfiles Myb-like domain profile. 135 181 IPR001005 -
Gso18g0581 448 SMART sant 186 234 IPR001005 -
Gso18g0581 448 SMART sant 134 183 IPR001005 -
Gso18g0581 448 PANTHER MYB DOMAIN PROTEIN 64-RELATED 63 330 - -
Gso18g0581 448 CDD SANT 138 181 IPR001005 -
Gso18g0581 448 Pfam Myb-like DNA-binding domain 138 195 - -
Gso18g0581 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 130 185 IPR017930 -
Gso18g0581 448 Gene3D - 188 254 - -
Gso18g0581 448 MobiDBLite consensus disorder prediction 231 245 - -
Gso18g0581 448 PANTHER MYB PROTEIN-RELATED 63 330 - -
Gso18g0581 448 MobiDBLite consensus disorder prediction 224 253 - -
Gso18g0581 448 Gene3D - 134 186 - -
Gso18g0581 448 ProSiteProfiles Myb-like domain profile. 182 232 IPR001005 -
Gso18g0581 448 SUPERFAMILY Homeodomain-like 132 228 IPR009057 -
Gso18g0581 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 186 236 IPR017930 -
Gso18g0581 448 CDD SANT 189 232 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0581 Gso-Chr18 6170439 6172948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0581 36 415 MYB Transcription Factor Family AT5G58850 41.337 2.71e-81 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g0581 Myb_DNA-bind_6 3.7e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0581 K09422 - gmx:100786295 881.322