Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0579 ATGGCATCCATTGCCACCTTCTTCAACAAGTTCCTCTACTTCTTTATCCTCTTAGTCCACCTCGGCTGCTTCATCTTCACCACCGCCGGGAAACAATCGCCGCCGTCAAAGAAACGCAAAACCTCACCTTTATCCCAACCCTCCTCCCCTTCCCACACCAAATTCAAAACCCACAAAGCCCTCTCCTCTTCTTGGCATTTCATCAAACATCTCTTCTCCACCAAGTCCTGCAAAACCCCAAACACCGCCACCACCCAATCCTCCCCTCAATCCACCGCCACCACCACTACCACCACCGCCTCCGCCGCCGCAGCAAGTTCTTTAATTTCCTTATCGCAACCCGACCCGGATAGGAATCAACCCGTTTCGTGCCCCGAATCCGGCATCTCCACCGACACCAACCTCTTCTTCCCTCTCCGCAACGACATCTTCCCCTGCACTGCGTGCGGCGAGATTTTCCAGAAGCCCCACCTCTTAGAAGCCCATCAAACCCTCAAACACGCGGTTTCGGATCTACCCAGATCCGACCCGGGTCACAACATCGTCCAAATCATCTTCAAATCGGGTTGGCCCGAATCCAAGCCATTCCCAACCATAACCCGCATTCTCAAGATCCACAACAGCCCCAAGATCCTCTCCAAATTCGAAGAGTACCGCGAGGCCGTGAAGTCCAAGGCGGCGCGTCACGGCGCCCATACGCGCCGCCGCGACGAGCGCTGCATCGCCGACGGAAACGAGCTCATGCGCTTCCACTGCTCGACCTTTTTATGCGACTTGGGACACAACGGGGATTCCGCGATTTGTTCGCAGCAGTTTTGTAACATTTGCGGAATTATTAAGTCCGGGTTTTCCCCGAAACTCGACGGGATCGCCACGCTGTCCACTAGTTGGCGGGCACACGTGGCGATCCCCGAGGACATAGAGCGGGAGTTCCGCTTCATGAATGTGAAGCGGGCAATGCTTGTTTGTCGGGTGATTGCGGGTCGGGTCGGATCGGATTCGGATGAGGTGGAAAAAGAGGACGGAGGGTTTGATTCGGTGATGGCGAGTGGGGTCTACACCCGCCTTGATGAGGAGGAGCTTTTGGTGTTTAATCCTAGGGCTGTGCTTCCTTGCTTTGTGATTGTGTATAGTGTGTGA 1140 0.55 MASIATFFNKFLYFFILLVHLGCFIFTTAGKQSPPSKKRKTSPLSQPSSPSHTKFKTHKALSSSWHFIKHLFSTKSCKTPNTATTQSSPQSTATTTTTTASAAAASSLISLSQPDPDRNQPVSCPESGISTDTNLFFPLRNDIFPCTACGEIFQKPHLLEAHQTLKHAVSDLPRSDPGHNIVQIIFKSGWPESKPFPTITRILKIHNSPKILSKFEEYREAVKSKAARHGAHTRRRDERCIADGNELMRFHCSTFLCDLGHNGDSAICSQQFCNICGIIKSGFSPKLDGIATLSTSWRAHVAIPEDIEREFRFMNVKRAMLVCRVIAGRVGSDSDEVEKEDGGFDSVMASGVYTRLDEEELLVFNPRAVLPCFVIVYSV* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0579 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 144 168 IPR013087 -
Gso18g0579 379 Gene3D - 167 378 - -
Gso18g0579 379 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 378 - -
Gso18g0579 379 PANTHER NUCLEIC ACID BINDING PROTEIN 3 378 - -
Gso18g0579 379 ProSitePatterns Zinc finger C2H2 type domain signature. 146 167 IPR013087 -
Gso18g0579 379 SUPERFAMILY ADP-ribosylation 169 378 - -
Gso18g0579 379 MobiDBLite consensus disorder prediction 30 55 - -
Gso18g0579 379 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0579 Gso-Chr18 6141135 6142906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0579 65 379 C2H2 Transcription Factor Family AT2G29660 55.657 3.44e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso18g0579 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0579 - - gmx:100785244 717.227