Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0572 ATGAAGTGGGAAATGGAGATCCTCCCTCCTGCATCACCTTACATGTACAATTCCAATTGGCTTCTTGATGATAACAGGACCAACAACACCAAATGGACCCCTGCAGAGAATAAGCTGTTTGAGAATGCTCTTGCCGTGTATGATAGGGACACTCCCGATCGGTGGCACAAGGTGGCCGAGATGATACCAGGAAAGACGGTTATGGATGTAGTGAAGCAGTACAAGGAATTGGAAGCAGATGTTTGTGACATAGAAGCAGGGTTGATCCCAATTCCGGGGTACAGTAGTGGTACCACCACAACCTCACCCTTCACCTTGGATTGGGTGAACACTAGTCCTGCTTATGATGATGGCTTCAAAGGAATCACTGCTAAGAGATCCTCCTCTGGAAGACCCCTTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAACATAAGTTGTTTCTACTGGGGCTGAAGAAGTATGGCAAAGGTGATTGGAGAAACATATCGCGAAATTATGTGATCACTAGGACGCCAACTCAAGTTGCTAGCCATGCTCAGAAGTACTTCATCAGGCAACTATCAGGAGGCAAGGACAAGAGGAGGGCTAGCATCCATGACATAACAACGGTTAATCTCACAGAAACCACCAGAACTTCTTCTGATGAAAGCAAGAGATCTGCTTCGCCACAAAATTCCGCAATGCTCTCACGCCACCAGCAGCTGAATTCTAATGCTGCCTCATCCGGATTGAATTTCCAGTGGAGCGATCAGCCAAATGCAGGGGTAGCTATGGCACTCAACCCTGCACATGAACAAGTCTTCATGTCCCCTTATGGCCTTAACTCATACGGGTTTAAGATGCAGGGCCAAAATCTGCACAGAAGTTCTCTTCATGAGTCTTCTTACTTAGGACCTCAGACACCAAACATGGTTTTCCAAATGCAGCCCTCCCAACACTATTCCCATGCATGA 966 0.472 MKWEMEILPPASPYMYNSNWLLDDNRTNNTKWTPAENKLFENALAVYDRDTPDRWHKVAEMIPGKTVMDVVKQYKELEADVCDIEAGLIPIPGYSSGTTTTSPFTLDWVNTSPAYDDGFKGITAKRSSSGRPLEQERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNYVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETTRTSSDESKRSASPQNSAMLSRHQQLNSNAASSGLNFQWSDQPNAGVAMALNPAHEQVFMSPYGLNSYGFKMQGQNLHRSSLHESSYLGPQTPNMVFQMQPSQHYSHA* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0572 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 191 IPR017930 -
Gso18g0572 321 ProSiteProfiles SANT domain profile. 143 191 IPR017884 -
Gso18g0572 321 Gene3D - 141 191 - -
Gso18g0572 321 MobiDBLite consensus disorder prediction 211 235 - -
Gso18g0572 321 ProSiteProfiles Myb-like domain profile. 24 78 IPR001005 -
Gso18g0572 321 CDD SANT 142 187 IPR001005 -
Gso18g0572 321 SUPERFAMILY Homeodomain-like 136 190 IPR009057 -
Gso18g0572 321 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 295 IPR043363 -
Gso18g0572 321 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 295 - -
Gso18g0572 321 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 138 190 IPR006447 GO:0003677
Gso18g0572 321 CDD SANT 31 77 IPR001005 -
Gso18g0572 321 Pfam Myb-like DNA-binding domain 142 187 IPR001005 -
Gso18g0572 321 ProSiteProfiles Myb-like domain profile. 135 187 IPR001005 -
Gso18g0572 321 SUPERFAMILY Homeodomain-like 30 83 IPR009057 -
Gso18g0572 321 Gene3D - 24 91 - -
Gso18g0572 321 SMART sant 139 189 IPR001005 -
Gso18g0572 321 SMART sant 28 80 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0572 Gso-Chr18 6020970 6023700 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso18g0572 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0572 - - gmx:100784163 655.981