Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0567 ATGGTCCTTTTACTCTCACTCGTGACTTCCAAAACTCACCATGCCCTATCTCTCCGCGAACGCTTCGCCGCCATCGTTTCCAACTTCACCACCTCTCTCTCCGCCGCTCCTTCCGACAGCCCTTGCCACCATGGGGCGAGAAGAAGAATGGTGATCAACTCTTCAACAGCCACGTTGACCGACGGCGACGAGAAGAAAAAATTCCCCCTGCTTTGTCATCATGATCACGATAATGAAACAAACAAGAGTGACCAGTCCTCGAAATTCTTTTGTGGTATATGTCTTGATGACAAACCAGTGTCTGATATGTTCAAAGTGGGTAAATGTGAGCACTCCTTTTGCACTCACTGCATATCCAAACACGTGGCCACTCAAATGCACCAAAACATTCTCGTGGTAATGTGTCCAAACCCAAAGTGTTCGATGGAATTGAAGCCTGAATATTTGCATGCCATTCTGCCTAGGGAAGTTCTTGTTAGATGGAAATGTGCGATGTTTGAGTCCTTGATTGTTGAGTCGGAGAAGACTTATTATTACTGCCCCTTTAAGGATTGTTCTGTTTTGTTGGTGAAAAATGGAGGAGAAGTTGTGACTGGTGCTGAGTGCCCCTCTTGTCATAGGCTGTTTTGTGCGCAGTGTAAGGTTCCTTGGCATGAAAAGATGAGTTGTAACGAATTCCAAGAGTTACAAAGGAAGATAAAAAAATTGGATGAAATGTCCCCGGTGCACGAGCTGGATGTGAACACATTACTTGCAGGTTACATTGAACATTTTCATGGCTTTTGA 786 0.4491 MVLLLSLVTSKTHHALSLRERFAAIVSNFTTSLSAAPSDSPCHHGARRRMVINSSTATLTDGDEKKKFPLLCHHDHDNETNKSDQSSKFFCGICLDDKPVSDMFKVGKCEHSFCTHCISKHVATQMHQNILVVMCPNPKCSMELKPEYLHAILPREVLVRWKCAMFESLIVESEKTYYYCPFKDCSVLLVKNGGEVVTGAECPSCHRLFCAQCKVPWHEKMSCNEFQELQRKIKKLDEMSPVHELDVNTLLAGYIEHFHGF* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0567 261 Pfam IBR domain, a half RING-finger domain 164 223 IPR002867 -
Gso18g0567 261 ProSitePatterns Zinc finger RING-type signature. 109 118 IPR017907 -
Gso18g0567 261 SUPERFAMILY RING/U-box 169 228 - -
Gso18g0567 261 ProSiteProfiles Zinc finger RING-type profile. 91 139 IPR001841 -
Gso18g0567 261 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 67 235 - -
Gso18g0567 261 ProSiteProfiles TRIAD supradomain profile. 87 261 IPR044066 -
Gso18g0567 261 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 67 235 IPR031127 GO:0004842|GO:0016567
Gso18g0567 261 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 169 IPR013083 -
Gso18g0567 261 SUPERFAMILY RING/U-box 86 168 - -
Gso18g0567 261 SMART ibrneu5 159 223 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0567 Gso-Chr18 5967250 5968035 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0567 91 234 C3H Transcription Factor Family AT2G19610 27.451 5.79e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0567 K11975 - gmx:102663173 244.588