Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0566 ATGATTGTCAAACAAAGTTTGCAAGCAGAAAATGAACAAGAGCAGCCACACCTCCTCACCTCAATCAAGCTAAACAAAGATTTGTTGAAGAGTGAACCCCCCATTGATCATGATCACAGTGAAGCAAAGAAGAGTGATCAACCCTCGCAATTCCTTTGTGGTATATGTTTTGATGACAAACCACTGTCTGATATGTTCAAAGATGGCAAGTGTAACCACCCCTTTTGCACTCACTGCATATCAAAACACGTGGTGACTCAAATACATCAAAGTATTCTCAAGGTCATTTGTCCAGACCCCAACTGTTATGTGGAATTTAAGCCTGAATATTTGCGTACCATCTTGCCTTGTGATGTCATTGATAGATGGGAATGTCTGAGACGTGAGTCTTTGATTCTTGGGTCGGAGAAGACTTACTGCCCTTTTAAGGATTGTTCGGTTTTGTTGGTGAATCAGGGAGGAGAAGTTGCCACCAGTGCTGAGTGTCCCTCTTGTCATAGGCGATTTTGTGCACATTGTAAGGCTCCTTGGCATGGAAGGAAGAAATGTGTGGATGCAACTTCTGCTACATTTGTGGGAAGAATTGGAACCCTGAACATCGATGCATGA 609 0.4286 MIVKQSLQAENEQEQPHLLTSIKLNKDLLKSEPPIDHDHSEAKKSDQPSQFLCGICFDDKPLSDMFKDGKCNHPFCTHCISKHVVTQIHQSILKVICPDPNCYVEFKPEYLRTILPCDVIDRWECLRRESLILGSEKTYCPFKDCSVLLVNQGGEVATSAECPSCHRRFCAHCKAPWHGRKKCVDATSATFVGRIGTLNIDA* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0566 202 SUPERFAMILY RING/U-box 127 185 - -
Gso18g0566 202 ProSiteProfiles Zinc finger RING-type profile. 53 98 IPR001841 -
Gso18g0566 202 Pfam IBR domain, a half RING-finger domain 127 183 IPR002867 -
Gso18g0566 202 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 23 185 IPR031127 GO:0004842|GO:0016567
Gso18g0566 202 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 23 185 - -
Gso18g0566 202 SMART ibrneu5 121 183 IPR002867 -
Gso18g0566 202 ProSitePatterns Zinc finger RING-type signature. 71 80 IPR017907 -
Gso18g0566 202 ProSiteProfiles TRIAD supradomain profile. 49 202 IPR044066 -
Gso18g0566 202 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 134 IPR013083 -
Gso18g0566 202 SUPERFAMILY RING/U-box 48 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0566 Gso-Chr18 5963409 5964291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0566 28 191 C3H Transcription Factor Family AT2G31770 25.150 2.19e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0566 K11975 - gmx:102668873 435.647