Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0564 ATGAAGAAAACACCAGCCCCCAGTTTGCATCAGTCTAACCAAAGACAAAAGAATGTTGGATTCCAAGATAGAGGTGCAGCCAATGGCACACAGAGTCACAGTGTTCAGAACCATTCTGCTCTGACATATTTCAAGTCTTCCTTCAAGAAATTTTTTACATTGTTTCTCTCTGGGAAGAGAAAAACAGATTCAGAAGCTGCTGAAAGTGATGACCGAAAGAATACACACAAAGTTAGAGGGGTATCATCTTCCACAGATGTATCATCTGATAGTTCCAAGAGTTCATCAAAAAGGGTGTCTTCTCATTCCTCTGCATCATCTGGCCCTACAAGAAGTAGTCAGCTTGGAATGGGAAATTTCACCTTTGAGGAAATCTACAAGGCAACGGCAAAGTTCTCTCTTGATAATAAGATTGGGGAAGGTGCGTTTGGAACAGTGTATAAGGGAAAGCTTAATGATGGATCCCTTGTGGCTGTAAAGCGTGCCAAGAAGGATTTACCAAACAATAACTTAGCTGAGTTCAAGAATGAAATAAACACCTTGTCAAAAATTGAGCACATTAACCTTGTAAAGTGGTATGGATATTTGGAGCATGGACATGAAAAAATTATTGTTGTTGAATATGTTAGTAATGGAACTCTTCGGGAACATTTAGATGGTATTCGGGGAGATGTACTAGAAATTGGTGAGCGTCTAGACATAGCAATTGATATAGCTCATGCAATTACTTACCTTCATATGTACACAGATCATCCAATTATTCATAGAGACATCAAAGCATCAAATATCTTAATCACTGATAAACTAAGGGCCAAAGTGGCAGACTTTGGTTTTGCTCGGTTGGGACCAGAAGACCCTGGTGCAACCCATATTTCAACTCAAATTAAAGGAACTGCTGGCTACATGGATCCTGATTACATGCGAACTCAACATCTCTCTGAAAAGAGCGATGTTTATTCCTTTGGCGTGTTGCTTGTTGAAATGATGACAGGAAGACATCCAATTGAACCACAGAGACCTCTCAGTGAGAGAGTTACAATTAAATGGGCAATGCAGTTGTTGAAACAAGCAGAAGTTGTGATGGCCATGGATCCGAGACTGAGGAGAAATCCAGCCTCAAACAAGGCAGTACAAAAGGTTCTCAAGCTAGCTTTCCAATGCCTTGCACCAGGGAGACAACCACGACCATCTATGAAGAGTTGTGCAGAGGTTCTGTGGGAGATCCGTAAAGATTTTAGAGAAAAAGCATTTTCTCATCCTCCTCACCTTTCTGCAGATTTTCCTCAAAGAGATGGTAGGAAGAATAGGCATAAGACATATGGTATTGAAGATGGTAAAGGCTATAAATTTGTATCTGCTTAA 1362 0.4038 MKKTPAPSLHQSNQRQKNVGFQDRGAANGTQSHSVQNHSALTYFKSSFKKFFTLFLSGKRKTDSEAAESDDRKNTHKVRGVSSSTDVSSDSSKSSSKRVSSHSSASSGPTRSSQLGMGNFTFEEIYKATAKFSLDNKIGEGAFGTVYKGKLNDGSLVAVKRAKKDLPNNNLAEFKNEINTLSKIEHINLVKWYGYLEHGHEKIIVVEYVSNGTLREHLDGIRGDVLEIGERLDIAIDIAHAITYLHMYTDHPIIHRDIKASNILITDKLRAKVADFGFARLGPEDPGATHISTQIKGTAGYMDPDYMRTQHLSEKSDVYSFGVLLVEMMTGRHPIEPQRPLSERVTIKWAMQLLKQAEVVMAMDPRLRRNPASNKAVQKVLKLAFQCLAPGRQPRPSMKSCAEVLWEIRKDFREKAFSHPPHLSADFPQRDGRKNRHKTYGIEDGKGYKFVSA* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0564 453 PANTHER OS01G0253100 PROTEIN 1 443 IPR045271 GO:0004714|GO:0006468
Gso18g0564 453 MobiDBLite consensus disorder prediction 1 35 - -
Gso18g0564 453 SMART serkin_6 132 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0564 453 MobiDBLite consensus disorder prediction 80 115 - -
Gso18g0564 453 Gene3D Phosphorylase Kinase; domain 1 89 208 - -
Gso18g0564 453 ProSitePatterns Protein kinases ATP-binding region signature. 138 164 IPR017441 GO:0005524
Gso18g0564 453 MobiDBLite consensus disorder prediction 63 79 - -
Gso18g0564 453 Gene3D Transferase(Phosphotransferase) domain 1 209 422 - -
Gso18g0564 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Gso18g0564 453 PANTHER OS02G0821400 PROTEIN 1 443 - -
Gso18g0564 453 MobiDBLite consensus disorder prediction 63 115 - -
Gso18g0564 453 Pfam Protein tyrosine and serine/threonine kinase 133 405 IPR001245 GO:0004672|GO:0006468
Gso18g0564 453 ProSiteProfiles Protein kinase domain profile. 132 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0564 453 SUPERFAMILY Protein kinase-like (PK-like) 109 408 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0564 Gso-Chr18 5940725 5944425 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0564 80 405 Trihelix Transcription Factor Family AT1G70460 39.759 3.38e-67 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Gso18g0564 PK_Tyr_Ser-Thr 4.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0564 - - gmx:100815871 853.973