Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0562 ATGGGAAAGGGATCTTTTCAGGACTCTGTTAAAGCTCTGGAAGCTGACATTCAGTATGCTAATACCCTGGCATTAGGCTATCCAAGGGACAAAGATGGAGGATGCTTTCAGATGAGGATATCATACAGTCCAGCAGCCCCTCTTTTTCTGTTTCTTGTTCAATGGACCGATTACCGCCTCGCCGGTGCTCTGGGTTTGCTGAGAATTCTAATTTATGTGACTTATGGAAATGGGAAGAATACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACTCGATTATATTTCCTGCTCTGTTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAGGAAACAGAAAGAAGTATATGCTCTTAGATACCAAAGGAAAAGTGAGTTCAATGAGAGAAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGTGGAGTGTGCTTGGAGGTGAAAGCAAAAGTTGTGCTTCCTAATTGCTGCCACTACATGTGTTTGAAGTGCTACAGAGATTGGTGTCAGAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAACCAACTCTGGGGACCTTTGGATTTACACTGACACCAGTGACATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTCTGTACATAGAGAAGCTGCCTCTAATTGTTCCAGATCCCAGATATGTGTTCTATGATCCACTTCTGAGATGA 732 0.418 MGKGSFQDSVKALEADIQYANTLALGYPRDKDGGCFQMRISYSPAAPLFLFLVQWTDYRLAGALGLLRILIYVTYGNGKNTMSIYERKASIRQFYSIIFPALLQLEKGITDLEERKQKEVYALRYQRKSEFNERRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCQRSQSCPFCRDSLKRTNSGDLWIYTDTSDIVDVGTIFKENCKMLFLYIEKLPLIVPDPRYVFYDPLLR* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0562 243 Pfam Zinc finger, C3HC4 type (RING finger) 144 189 - -
Gso18g0562 243 PANTHER RING FINGER PROTEIN 41, 151 1 243 - -
Gso18g0562 243 ProSiteProfiles Zinc finger RING-type profile. 147 185 IPR001841 -
Gso18g0562 243 SMART ring_2 147 184 IPR001841 -
Gso18g0562 243 ProSitePatterns Zinc finger RING-type signature. 162 171 IPR017907 -
Gso18g0562 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 195 IPR013083 -
Gso18g0562 243 SUPERFAMILY RING/U-box 129 189 - -
Gso18g0562 243 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0562 Gso-Chr18 5919127 5922045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0562 142 188 C3H Transcription Factor Family AT1G04360 37.255 5.69e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0562 - K25840 gmx:100808567 492.656