Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0558 ATGACACACCACACCATGGAGGAGGACTTGAACATCTTGGAGGTTAACACTGAGCCTTGCAACAACAATGCTATTACAAGTGCAAAGATTGCACCACCACAGGGAAAGAACCTTAGTCCAAATGTAACAAAGAAGTGTCTATTTCTGGTCACCAAACTTCGCTTCCAAATGCTCGGCAATTTCACAACCAATTTGCGAGAGGTCATTTTTGGGACTAAGCTTGCAGTGCTTTTTCCTGCTGTCCCTTTAGCTGTTGTTGCAGATTTTTATAAACTTGGAAGACCTTGGATTTTTGCTTTGAGCCTACTTGGACTCACCCCTCTAGCTGAACGTGTCAGCTTCCTTACTGAGCAAATTGCGTATTACACTGGCCCCACAGTTGGAGGGCTTCTGAATGCAACCTGTGGTAATGCAACTGAGATGATCATATCTTTGCTAGCACTTCACCAAAACAAAGTAAATGTTGTGAAGTTCTCTCTGCTGGGATCTATTTTCTCAAACCTTCTATTAGTTCTTGGAAGCTCACTCCTTTGTGGTGGCTTAGCCAACCTTAGGAAGGAACAAAGATATGACAGAAAACAGGCAGATGTAAACTCACTACTTTTGTTGCTGGGGTTGCTATGCCATTTGCTGCCATTACTGCTCAGATATGCCTTAGCAGGAGAATATCCTTCTATAGCCACTAGTAATCTACAATTGTCAAGAGCAAGCAGCATTGTTATGCTTCTAGCATATGCTGGATACATCTTTTTTCAATTAAAAACACATCGACAACTTTTTGATGCACAAGAGGAAGATGAAAATGAAGATGAAGAGAAGGCTGTGATAGGATTTTGGAGTGCATTTTCTTGGTTGGTCGGTATGACACTTATCATATCTCTGCTTTCTGAATATGTTGTTGCAACCATTGAGGCTGCTTCAGATTCTTGGGGCATTTCTGTTAGCTTCATTAGCATAATTTTGTTACCAATTGTTGGGAACGCTGCAGAACATGCTGGCTCAATCATATTTGCTTTCAAGAACAAGTTGGACATATCTTTGGGGGTTGCTATGGGATCTGCAACCCAAATTTCTATGTTTGTGGTTCCATTTAGTGTGGTTGTTGCATGGATAATGGGTATAGAAATGGACTTGGATTTCAATCTCCTTGAAACTGGGTGTCTTGCTTTTACAATTATTGTTACAGCATTCACTTTGCAGGATGGAACTTCACACTACCTGAAAGGAGTGGTTCTTTTCCTGTGTTACATCATCATTGCTGCATGCTTTTTTGTTCATAAAACTAGTACTCCACTAATCAATCAAGCATAG 1311 0.4081 MTHHTMEEDLNILEVNTEPCNNNAITSAKIAPPQGKNLSPNVTKKCLFLVTKLRFQMLGNFTTNLREVIFGTKLAVLFPAVPLAVVADFYKLGRPWIFALSLLGLTPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIISLLALHQNKVNVVKFSLLGSIFSNLLLVLGSSLLCGGLANLRKEQRYDRKQADVNSLLLLLGLLCHLLPLLLRYALAGEYPSIATSNLQLSRASSIVMLLAYAGYIFFQLKTHRQLFDAQEEDENEDEEKAVIGFWSAFSWLVGMTLIISLLSEYVVATIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPFSVVVAWIMGIEMDLDFNLLETGCLAFTIIVTAFTLQDGTSHYLKGVVLFLCYIIIAACFFVHKTSTPLINQA* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0558 436 TIGRFAM cax: calcium/proton exchanger 79 424 IPR004798 GO:0006816|GO:0015369
Gso18g0558 436 Gene3D - 125 267 IPR044880 -
Gso18g0558 436 Gene3D - 273 425 IPR044880 -
Gso18g0558 436 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 33 430 IPR004713 GO:0006812|GO:0008324|GO:0016021
Gso18g0558 436 Pfam Sodium/calcium exchanger protein 281 422 IPR004837 GO:0016021|GO:0055085
Gso18g0558 436 Pfam Sodium/calcium exchanger protein 96 253 IPR004837 GO:0016021|GO:0055085
Gso18g0558 436 PANTHER VACUOLAR CATION/PROTON EXCHANGER 33 430 - -
Gso18g0558 436 TIGRFAM caca2: calcium/proton exchanger 61 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0558 Gso-Chr18 5864181 5869488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0558 44 427 Antiporters AT2G38170 70.256 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0558 K07300 - gmx:100778821 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0558 18 5864181 5869488 Gso14g1629 14 48287357 48292543 PCT
Gso18g0558 18 5864181 5869488 Gso2g1926 2 43500586 43506552 PCT
Gso14g1629 14 48287357 48292543 Gso18g0558 18 5864181 5869488 PCT
Gso2g1926 2 43500586 43506552 Gso18g0558 18 5864181 5869488 PCT