Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0555 ATGGCGAAAACGACGTCGTTGCTGCTCTTTACACTGCTCCTCTTCGGAACCCTAGCTCTCATCCAGGCGAAGAAATCGAAGGAGGATTTGAAGGAGGTGACCCACAAGGTTTACTTTGATGTTGAGATTAATGGAAAAGAAGCAGGTCGTATTGTAATGGGTCTTTATGGGAAGGCTGTTCCAAAAACTGCAGAAAACTTCCGAGCACTTTGCACAGGGGAAAAGGGAACTGGTAAAAGTGGAAAGCCTCTCCATTACAAAGGTAGCTCATTCCATAGAATTATTCCTAGCTTTATGCTTCAAGGAGGTGATTTTACACAAGGAAATGGAATGGGTGGAGAATCAATTTACGGAGAGAAGTTTGCTGATGAGAACTTCAAGTTAAAGCATACTGGACCAGGACTTCTATCAATGGCAAATGCTGGTCCTAATACCAATGGTTCACAATTTTTCATTACAACTGTGACAACTAGCTGGTTGGACGGAAGGCATGTTGTTTTTGGTAAAGTTCTTTCTGGAATGGATGTTGTTTACAAGATTGAAGCTGAAGGAACACAAAGTGGCACTCCCAAGAGCAAGGTTGTGATTGTTGACAGTGGTGAACTCCCTCTATAA 615 0.426 MAKTTSLLLFTLLLFGTLALIQAKKSKEDLKEVTHKVYFDVEINGKEAGRIVMGLYGKAVPKTAENFRALCTGEKGTGKSGKPLHYKGSSFHRIIPSFMLQGGDFTQGNGMGGESIYGEKFADENFKLKHTGPGLLSMANAGPNTNGSQFFITTVTTSWLDGRHVVFGKVLSGMDVVYKIEAEGTQSGTPKSKVVIVDSGELPL* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0555 204 CDD cyclophilin_ABH_like 35 200 - -
Gso18g0555 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 12 204 - -
Gso18g0555 204 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 86 103 IPR020892 GO:0003755|GO:0006457
Gso18g0555 204 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 39 199 IPR002130 GO:0000413|GO:0003755
Gso18g0555 204 SUPERFAMILY Cyclophilin-like 33 202 IPR029000 -
Gso18g0555 204 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 38 201 IPR002130 GO:0000413|GO:0003755
Gso18g0555 204 Gene3D - 22 203 IPR029000 -
Gso18g0555 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 55 70 IPR002130 GO:0000413|GO:0003755
Gso18g0555 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 91 103 IPR002130 GO:0000413|GO:0003755
Gso18g0555 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 134 149 IPR002130 GO:0000413|GO:0003755
Gso18g0555 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 149 161 IPR002130 GO:0000413|GO:0003755
Gso18g0555 204 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 162 177 IPR002130 GO:0000413|GO:0003755
Gso18g0555 204 PIRSF Peptidylpro_ismrse 19 203 IPR024936 GO:0003755
Gso18g0555 204 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-1 12 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0555 Gso-Chr18 5842211 5845276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0555 49 199 U-box Gene Family AT5G67530 41.830 4.42e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0555 K01802 - gmx:100305485 392.889