Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0552 ATGACACCACCCTTCACTCTCTCTCTCTCCCTCTTTGTCATTCTCACCATAACCGCCGTCCACGGCCTGGGCTCCGCCGCCACCACTGCCGTCACCTACGGCACCGCCACCGTGTGCGGCATCGTCGCCGGGGAGCCCCAGCACCGCATCCAGTGTTCCCGCAGCGGCAGGCGCGTCGTCCCCCTCACCCTCCCCAACGTTTCCTTCGACGCCATCTCCGGCGGCCGGAGCTTCTTCTGCGGCCTCCGCTCCGGCGGCCGCAGCCTCCACTGCTGGGACACCGCCGCCCCAAACGCCTACTTCCGCTCCAAGAGACTCTTCCACAGCGACGTGGTGCAGTTGGCTGACGTGGCAGTTGGCGACTCTCAGGTGTGCGCCAGAGAGGTGCAATCCGGTGTTGTGCGGTGCTGGAGAGGAAGCGGTGGGGTCCAGTTCAGTTCCCCTTCGGAGGGGTTAAGGTTTCGTAGCAATAGCATCACATGTGGTTGTGGTTTTTCATGTGGGGTGATAAAAGAGAGTGGAAGAGTCGTGTGTTGGGGTGATGGTGATGAGGGTGCAAATACAAAAAGTATTAGCGATGAGATTCAAAGAAAGTTTGAGAATTTCACTATGTCAAGTTTGGTTGCTGGGGTGTCTCATGTGTGTGGTTTGACTCTTCATGGGGCTTTGGTTTGTAGAGGGAACAATGCTTCTGGTCAACTAGGAAATAATGATGGTGTTTTGAGTTCTTCTTTGGAGTTTTCAGGTCTTGCTTTGGGAGAAGATTTCACGTGTGGAATTAGGACTAGGAATGGTGTTGTTGTGTGTTGGGGTGGTGGTTTTGAAAGCGATGTGGTGAAAGGTGTTTCTTTTGAGTCACTTGTTGCTGGTTTGGATTATGTGTGTGGGTTGACAACTAGGAATTTGTCAGTGGTGTGTTGGGGTAAAGGCAGGTTTTTTCATGTGCCTAGTGAGCTTCCATTGGGTGTGATTCTTCCAGGTCCATGTGTTGAGGGTGCTTGTAGCGGCTCTTGTGGTACATATCCTGATTCTGGTGCTCTTTGTCATGGCTCTGGGAGTATTTGTTACTCTTGTCAAACTGAGGTTCCACTAGCAGTTCCATTGCTTCCACCATCAACAACACAAGTTGTTCCAAAACAAGAACATTCTTCACGTGGAGGAAGAAGCTTGAGGGAGTTTTTGATTTTTTTTATTGTTGGATCAGTTGGTGTTTTTGTGGGGTTATGCACTATTCTTTATTTCATTTGGATTTGTGCAAGGAGGTTTTTGTTGAGTAGAAAAGAAGTAGGAGGTAATAATTCTGTGAAACCTACAAGCTCAGAGAGTGATGCATATGTGGATATAATCCCCATGCCTAATGTTGGTTCTAATGGGACAACATTCAGAACTTTTTCTAGCAAAAGTCAGGCATCAAGAAGATTTGGGAGGCATAGGAGTGGTTCATCATCGAAGCATGTCGACAGAACCGAGAGTTTCTCATTGTCTGAACTTGCAACGGCCACTGACAACTACTCGCTGTTTAACAAAATAGGTGCTGGTAGCTTTGGCTGTGTTTACAAAGGCATGCTAAGAGATGGTCGTGAAGTAGCAATTAAAAGAGGAGATACCAGTGCCATGAAGAAGAAATTTCAGGAAAAAGAGATTGCTTTTGATTCTGAATTGGCCATGCTGTCACGGCTTCACCACAAGCACTTGGTGAGGCTAATTGGGTTCTGTGAGGAGAATGATGAGAGGCTCTTGGTCTATGAGTACATGAGTAATGGTTCACTTTATGACCATTTGCATGACAAGAACAATGTTGACAGAAGTAGCAACATTTTGAATTCTTGGAAGATGAGGATCAAGATTGCATTGGATGCTGCTAGGGGAATTGAGTACATTCACAACTATGCGGTGCCACCCATTATCCACAGGGACATCAAGTCCTCCAATATACTCTTGGATTCAAACTGGAATGCTAGAGTTTCTGACTTTGGATTATCAAAAATTTGGCCAGAGACTGAGCAAGAATTGATGTCCTCCAAAGCAGTTGGCACTGTTGGATACATAGACCCTGAGTACTATGTGTTGAATGTGCTGACCACAAAGAGTGATGTGTATGGTTTAGGAGTGGTAATGTTGGAGCTTCTCACAGGAAAAAGAGCAGTGTTCAAACCTGAAGATGGGTCAGGCCCTATGGGGGTGGTGGAATACACAGGGCCAAAGATAGCATCAGGAGAGCTTTGGAGTGTGTTGGATTATAGAGTTGGTCAACCTGAAGTGAATGAGGTTGAGTCCCTTGAGATCATGGCTTACACTGCTATGCATTGTGTGAACTTGGAGGGAAAAGAGAGGCCTGAAATGACTGGCATAGTTGCTAACTTGGAGAGGGCATTGGCTTTCATTGAGGGAACCCCTACTAGCCTCTCCATAGCTTCATTCTCTGCCCCTCTTGAATAA 2439 0.474 MTPPFTLSLSLFVILTITAVHGLGSAATTAVTYGTATVCGIVAGEPQHRIQCSRSGRRVVPLTLPNVSFDAISGGRSFFCGLRSGGRSLHCWDTAAPNAYFRSKRLFHSDVVQLADVAVGDSQVCAREVQSGVVRCWRGSGGVQFSSPSEGLRFRSNSITCGCGFSCGVIKESGRVVCWGDGDEGANTKSISDEIQRKFENFTMSSLVAGVSHVCGLTLHGALVCRGNNASGQLGNNDGVLSSSLEFSGLALGEDFTCGIRTRNGVVVCWGGGFESDVVKGVSFESLVAGLDYVCGLTTRNLSVVCWGKGRFFHVPSELPLGVILPGPCVEGACSGSCGTYPDSGALCHGSGSICYSCQTEVPLAVPLLPPSTTQVVPKQEHSSRGGRSLREFLIFFIVGSVGVFVGLCTILYFIWICARRFLLSRKEVGGNNSVKPTSSESDAYVDIIPMPNVGSNGTTFRTFSSKSQASRRFGRHRSGSSSKHVDRTESFSLSELATATDNYSLFNKIGAGSFGCVYKGMLRDGREVAIKRGDTSAMKKKFQEKEIAFDSELAMLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLYDHLHDKNNVDRSSNILNSWKMRIKIALDAARGIEYIHNYAVPPIIHRDIKSSNILLDSNWNARVSDFGLSKIWPETEQELMSSKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKRAVFKPEDGSGPMGVVEYTGPKIASGELWSVLDYRVGQPEVNEVESLEIMAYTAMHCVNLEGKERPEMTGIVANLERALAFIEGTPTSLSIASFSAPLE* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0552 812 ProSitePatterns Protein kinases ATP-binding region signature. 510 540 IPR017441 GO:0005524
Gso18g0552 812 Pfam Protein kinase domain 504 717 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0552 812 Gene3D - 51 314 IPR009091 -
Gso18g0552 812 SUPERFAMILY Protein kinase-like (PK-like) 481 788 IPR011009 -
Gso18g0552 812 ProSiteProfiles Protein kinase domain profile. 504 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0552 812 CDD STKc_IRAK 510 790 - -
Gso18g0552 812 Gene3D Transferase(Phosphotransferase) domain 1 585 796 - -
Gso18g0552 812 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 6 806 IPR044815 GO:0004674
Gso18g0552 812 SUPERFAMILY RCC1/BLIP-II 54 273 IPR009091 -
Gso18g0552 812 Gene3D Phosphorylase Kinase; domain 1 475 584 - -
Gso18g0552 812 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 6 806 - -
Gso18g0552 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Gso18g0552 812 SMART serkin_6 504 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0552 Gso-Chr18 5809730 5812504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0552 6 803 Receptor kinase-like Gene Family AT3G55950 50.973 0.0 703
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Gso18g0552 Pkinase 3.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0552 - - gmx:100776682 1617.05