Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0550 ATGTGCAGTGGTTCCAAGAGAAAACCTTCCCAAACTGGTTTAATAATGGGGGATGAGTATGGAAGACAAGAAGGGTTGCATCATGAAATTTCTGCTTTGCTCGAGTTTTCAGCCGCAGATGATGTAAGGGCTTTCAGAGATGCTGTTGAAAAAGAGGGTCGTGATTTTGATGAGGTGGGGTTGTGGTATGGAAGGAGGGTTGGCTCAAAGGTATTGTGTTTTGAAGAGAGGACCCCTCTTATGATTGCGGCCATGTTTGGAAGCAAAAGTGTGTTATCTTATATTCTTGGGACGGGTCTTGTTGATGTTAACCGGGCTAGTGGGTCAGATGGGGCTACTGCCCTTCATTGTGCTGTCGCTGGGGGTTCTTCTGCCTCCCTTGAAATCATCAAGCTTTTGCTCGATGCATCGGCAGATGTTAGTACTGTTGATGCCAATGGGAACAGGTCGTGCGACTTGATTTTCTCGGTGTCTAATGGTGTATTCAATTCAAGAAAGAGGATACTACAAGCCATACTAGAAGGTGCAGATGGTATTGATGAGGCTTGCCTTCCATTTGAGGAAGCGGTTGGCCAAATGGAGAAACAGCAACAGCAAGATGTAGATGCATTTCAGGTTTCCAAAGATGGGACTGAGAAGAAAGATTATCCGGTTGACCTCTCTCTTCCAGACATAAAAAATGGGATATATAGCTCAGATGAGTTTAGGATGTATACATTCAAAGTGAGGCCTTGTTCAAGAGCTTATTCTCACGATTGGACTGAGTGCCCCTTTGTTCATCCTGGGGAAAATGCAAGGCGCCGTGATCCAAGGAGATATCAATATAGCTGTGTCCCTTGCCCCGAGTTTCGAAAGGGATCCTGCAGCAAGGGGGATGCCTGTGATTATGCGCATGGTATTTTTGAGTGCTGGCTTCACCCTGCGCAATATAAAACACGGCTTTGCAAGGAGACAGGATGCACCAGAAGAGTTTGTTTCTTTGCTCACAATGTGGAGGATCTCCGCCCCGTGTATGCTTCCACTGGTTCTGCTATGCCTTCGCCCAGATCATATTCTGTTAGTACTCCTTCGTTGGACCCTTTCACACTGGGTTCTCCATCTTCCTTGATACCACCTGCCTCAACCCCACCTTTGACTCCATCCAGAGGTTCTTCTCCTGCGGGTGAAACCATGTGGCACTCTCAGTCTCATGCTACAGTTCCTACCCTTCAGCTGCCCCAAAGCAGATTGAAATCTGCACTAAATGCTAGAGATGTTGAATTGGATATGGAATTGCTTGGAATTGAAAATCATAGACTTTTGATGCAGCAGCACCTAATGATGGAGGGGATGGCTGGTCTTTCATCACCTTCTAACTGGAATAACTCCATGCCTAATAGTCCATCAGTTGGTGATTATACCGGGGAGTTCAATAGGCTTGCAGGAGTGCAACCTACTAACCTCGACGACATTTTTGGGTCTCAGATACAGTATCCAGCCAGAATTCAAGTGCATCAAAATGTGAATCAGCAACTGAGAGGCTATCCTTCCAACCCTTACAATTCAAGTGTGATTGGATCACCCTCATTCAGGGTTGATCCATCTGGGACTGCAGCCACAATGCCTTTGAATCCAAGAAATGCTGCCTTTGCTAATCGGAGCCAGAGCTTTGTTGAGCCTAATATGGTTAACATTGATTCTGACTTTCCTTCTGCTACCTCTACTGCTGCTGAGCCTTCTACCTTCTCTGGTTGGGGTCCCTCTGATGGCAAGTTAGATTGGTCCATCCGTGGCGATGAACTAAAAAAGCCGAGCAAATCTTCTTCTTCTGGATTTTTGAAGCAGTAG 1827 0.462 MCSGSKRKPSQTGLIMGDEYGRQEGLHHEISALLEFSAADDVRAFRDAVEKEGRDFDEVGLWYGRRVGSKVLCFEERTPLMIAAMFGSKSVLSYILGTGLVDVNRASGSDGATALHCAVAGGSSASLEIIKLLLDASADVSTVDANGNRSCDLIFSVSNGVFNSRKRILQAILEGADGIDEACLPFEEAVGQMEKQQQQDVDAFQVSKDGTEKKDYPVDLSLPDIKNGIYSSDEFRMYTFKVRPCSRAYSHDWTECPFVHPGENARRRDPRRYQYSCVPCPEFRKGSCSKGDACDYAHGIFECWLHPAQYKTRLCKETGCTRRVCFFAHNVEDLRPVYASTGSAMPSPRSYSVSTPSLDPFTLGSPSSLIPPASTPPLTPSRGSSPAGETMWHSQSHATVPTLQLPQSRLKSALNARDVELDMELLGIENHRLLMQQHLMMEGMAGLSSPSNWNNSMPNSPSVGDYTGEFNRLAGVQPTNLDDIFGSQIQYPARIQVHQNVNQQLRGYPSNPYNSSVIGSPSFRVDPSGTAATMPLNPRNAAFANRSQSFVEPNMVNIDSDFPSATSTAAEPSTFSGWGPSDGKLDWSIRGDELKKPSKSSSSGFLKQ* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0550 608 Gene3D - 276 336 - -
Gso18g0550 608 SMART ANK_2a 110 142 IPR002110 GO:0005515
Gso18g0550 608 SMART ANK_2a 75 105 IPR002110 GO:0005515
Gso18g0550 608 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 19 606 - -
Gso18g0550 608 PANTHER UNKEMPT FAMILY MEMBER 19 606 IPR045234 -
Gso18g0550 608 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Gso18g0550 608 Gene3D - 26 170 IPR036770 -
Gso18g0550 608 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Gso18g0550 608 Pfam Ankyrin repeats (3 copies) 70 142 IPR002110 GO:0005515
Gso18g0550 608 MobiDBLite consensus disorder prediction 562 608 - -
Gso18g0550 608 SMART c3hfinal6 274 300 IPR000571 GO:0046872
Gso18g0550 608 SMART c3hfinal6 309 331 IPR000571 GO:0046872
Gso18g0550 608 MobiDBLite consensus disorder prediction 380 404 - -
Gso18g0550 608 ProSiteProfiles Zinc finger C3H1-type profile. 274 301 IPR000571 GO:0046872
Gso18g0550 608 SUPERFAMILY Ankyrin repeat 73 149 IPR036770 -
Gso18g0550 608 MobiDBLite consensus disorder prediction 362 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0550 Gso-Chr18 5761150 5764212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0550 28 602 C2H2 Transcription Factor Family AT5G12850 39.117 1.16e-129 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso18g0550 Ank_2 4.3e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0550 - - gmx:100787878 1231.47