Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0547 ATGTCCATCCAGTATTCCCCGCCCCCGCCGCCCACCCTCCACTCCATCCGCATCTCCCTCTCCCTCTCCGACATCTCCACTTCCCCGCCGGACCGCCGCCCCTTCGACACGCCCCGCCGCTTCGCCGCCTTCGCCCACCGCCTCTCCCACCTCCTCCTTCTCCCGCTCCCGCACTCCCCGCCCGTCCACACCGCCCTCAAGGGACTCTCCGCCGAGCTCTCCAAGGCCGCCGAGACCGTCTCCGTCTACAACAACGGAAGCAAGATACTCGTCCTTGTCACCTGCAAAATCCTCTCTTCCGCCCTCCAAGAACGCGCCGTCGCCATCGCCGGCTGGCTCGCACTCCTTGCTTCCGCCCTCCCCGCCGCCGGCGATGACGACGACCTCCGCAAGAAGGTGTCCGACCTCGCTAGGGACATGAAGCTCGCACAGTTCAAAGTCTCAGAGAACGAAGAGAGGGTTTGGTGCACGCTGGAAAAGGAAGGGGAAGGGAGAGAGAGCAGCAAAGCAGTTCAGAGTGGTATTGTCATGGATTTGGCTCGTGCTTTGGGGTTTGAGCCTGGTGATCGTGCTGAGTTTTGTAACCAAGTGAAGCTCTTCAAAGGTGATCCTTTTAGATCCCATTCTGTGCCTGAGAGAAGGGTATTGATGTCCTTGGAGAGGATTCTTAGTAACTGGTCTGTGGAGCCTGTCCCTGTGAGCCCTAATTGGGACTTTGAAATTGTTGAAGATGCTGCTGCTCCTGTTTTTGCATTTAAGAGTTTCCTCTGCCCCTTGACCAAGGAAGTCATGAGGGACCCTGTGGTTGTTCTGGAGTCCTCTCAGGCCTATGAGAGGACTGCAATTGAGTACTGGTTTGAACGGTGCATCCAGGATGGCCGTGACCCCACTTGTCCGGTCACTGGCAGGGTTCTTAAGTCCTTGGAGCTGAAGCCTAATATTGGGTTGGCTGGAGCAATTGAAGAGTGGGTTGGAAGGGTTGTTGAGTATCAAATCAAATCTGCAGTGCAGTATCTGAGTGAGGATCCCTTGTCTGTTGATCATGTTGAGCGTGCTCTGGATCATGTTTTTAAGGTTTCTGAAGAGCACCCCACTAGAAGATACATAATCAGGAATGCTGGTGTTGTGCAGCTGATAGTGACTGTGCTCAGTAATAACTCCAAAACTATTGGATCGCATTTGAGAAGCAAAGCTCTAATGACTTTACTTAGCTTGGCAGAGGATGAAGAAAGCAGGAAAATAATGCTTGAACGGGGCACTACTAGATTGGCCATACATAGTCTTATTGGGAACTCTGAGAAAGAGAGAGAACATGCTATCAAGTTATTACTAGAGTTCTGCAATGATGAAGATTGTTGCGTAAGAATTGCATCAGAAAAAGGTGCATTAGTTCTTCTCTCAAGTATAGCAGGAAATATGGAGTATCCATCCTTGTCCAATTTAGCTGAGGAAGTCTTAAGGCAGATGGAGAGGGTAGAGGATAATGTTCAATGTTTGGCAGCAGCTGGAAGATTTGGACCATTGATTTCACGGTTACATGATGGCTCTGTTGGTGTAAAGATAGAGATGGCTTCTCTGGTGGGAAGGATGACCTTGACAAATAGCTGTAAAGAACAAATTGCAAGGCAAGGTGCCAGAGTATTTGTCGAACTTTTGTCTAATCAAGAAGGAAGCGGACCAAGCCTTCAAGCATTGTATAACTTGTCAGGGTTGGATGGCAATGCAACCATCCTTATTGAATCTTCAGTCCTTCCATCTCTTATAGAAGTTTTATTTGATGAGAAGGATCCATCATATGAGCTGAAGTCATTAGCTGCTTCAACAATTGCGAATATTGTATCTAAGCCAGGGCATTGGGAATTAGCATCTGCTGACAAGAAAGGAAACCCAATGCAGTCAGAAATTGTTGTTTTAAGACTTTTGGGGCTTTTAAACAGTTTGCCCTCTCAGTGTCAAGTGATAGTTCTTCGCATTCTTTGTGGTATTACATCATCTCCTCAGGCATCAGAGTTAGTAGCCAGTCATATCACGTCCAAGGGTGGCTTTGGATCGGTCATACCATTTCTTGAACATCCAGAAGTTGAACATAGAGTGTTTGCTTTCAAGCTAACAAGACTAATATCTGAATGGTTTAGTCAATATATTGCAAATGAGTTGAGACTGTCAAACAAACTTACGGTACTCAAAGAAAAGCTGTTAAATAACCAATCTACAAGTGATGAGAGATCAGATGCAGCACAGATACTTGCAAATTTTTCCCTCTCAGAAGGTGAAATACAGACACTTTTAGGAGGTGATTTTGTGGAATGGACTGCTGTTACTCTTAAGAACCAGCGGCGCATTTCCAATGCAAGGTCTTCTTATACTGCATCAGGCATGCAGGAAGGTCTTATAGGTCTCTTGCTTCACTTCACAAGGAACCTTGATCAACAAACTCTTAATATAGTTAGAGAAAATCGCCTTATGGGTATTTTCTGTGAGCAGCTGGATTATACTTCAAAAGCAAAGGTGAAACAACTCGCTGCCATTGGATTGAAACACCTATCAGAATTTGGAAGGTCAGTTACTGCTAGGGACTCTAAACCACCATCTTCCAGTGGGTTCTGCTCTTTCCTCGTGCTCATGTGTGGGAAAGCCTCTAGTCAACCTTCCATGTGCCCCATTCACAACTGCCTGTGTGACGAAGATAGTCAGCTGTGCCTGCTTAAGAGCAACTGTATCAAACCCCTTGTTGACATCCTCCATGACAATGACACTGATGTTCAGCTTGCTGCAGTGGATGCACTATCTACTCTAGTACTAGATTACACGTCTTGCAGTTTCAAAAGAGTTGTGGATGAGCTTGAGCATCTGGGTGCAATTGATTCTCTTATCACTCTCTTTACAGAAGTTAGATCTGAGGAGCTTCAAGAGAAGACAATTTGGATGATAGAAAAGATATTGAGAGTAGACAATGTCAGCGATCGGTATGCACTCAATCATTCTCTTGTGCGAGCTTTGGTTGAATCCTTTAAGCATGGGAATACCAACACAAGGAAACATGCTCAAGATGCTTTAACCCTCCTAAAGCAGTTATCAGGAGTTAGTGGAAAGACATCAAGTCAAACTCGAGCTAGAAGATAG 3123 0.4643 MSIQYSPPPPPTLHSIRISLSLSDISTSPPDRRPFDTPRRFAAFAHRLSHLLLLPLPHSPPVHTALKGLSAELSKAAETVSVYNNGSKILVLVTCKILSSALQERAVAIAGWLALLASALPAAGDDDDLRKKVSDLARDMKLAQFKVSENEERVWCTLEKEGEGRESSKAVQSGIVMDLARALGFEPGDRAEFCNQVKLFKGDPFRSHSVPERRVLMSLERILSNWSVEPVPVSPNWDFEIVEDAAAPVFAFKSFLCPLTKEVMRDPVVVLESSQAYERTAIEYWFERCIQDGRDPTCPVTGRVLKSLELKPNIGLAGAIEEWVGRVVEYQIKSAVQYLSEDPLSVDHVERALDHVFKVSEEHPTRRYIIRNAGVVQLIVTVLSNNSKTIGSHLRSKALMTLLSLAEDEESRKIMLERGTTRLAIHSLIGNSEKEREHAIKLLLEFCNDEDCCVRIASEKGALVLLSSIAGNMEYPSLSNLAEEVLRQMERVEDNVQCLAAAGRFGPLISRLHDGSVGVKIEMASLVGRMTLTNSCKEQIARQGARVFVELLSNQEGSGPSLQALYNLSGLDGNATILIESSVLPSLIEVLFDEKDPSYELKSLAASTIANIVSKPGHWELASADKKGNPMQSEIVVLRLLGLLNSLPSQCQVIVLRILCGITSSPQASELVASHITSKGGFGSVIPFLEHPEVEHRVFAFKLTRLISEWFSQYIANELRLSNKLTVLKEKLLNNQSTSDERSDAAQILANFSLSEGEIQTLLGGDFVEWTAVTLKNQRRISNARSSYTASGMQEGLIGLLLHFTRNLDQQTLNIVRENRLMGIFCEQLDYTSKAKVKQLAAIGLKHLSEFGRSVTARDSKPPSSSGFCSFLVLMCGKASSQPSMCPIHNCLCDEDSQLCLLKSNCIKPLVDILHDNDTDVQLAAVDALSTLVLDYTSCSFKRVVDELEHLGAIDSLITLFTEVRSEELQEKTIWMIEKILRVDNVSDRYALNHSLVRALVESFKHGNTNTRKHAQDALTLLKQLSGVSGKTSSQTRARR* 1041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0547 1040 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 1035 - -
Gso18g0547 1040 Coils Coil 475 502 - -
Gso18g0547 1040 SUPERFAMILY ARM repeat 333 618 IPR016024 -
Gso18g0547 1040 SUPERFAMILY RING/U-box 253 324 - -
Gso18g0547 1040 Pfam Armadillo/beta-catenin-like repeat 899 932 IPR000225 GO:0005515
Gso18g0547 1040 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 326 IPR013083 -
Gso18g0547 1040 ProSiteProfiles U-box domain profile. 250 330 IPR003613 GO:0004842|GO:0016567
Gso18g0547 1040 Pfam U-box domain 255 324 IPR003613 GO:0004842|GO:0016567
Gso18g0547 1040 SMART arm_5 894 934 IPR000225 GO:0005515
Gso18g0547 1040 SMART arm_5 363 407 IPR000225 GO:0005515
Gso18g0547 1040 SMART arm_5 533 570 IPR000225 GO:0005515
Gso18g0547 1040 SMART arm_5 571 614 IPR000225 GO:0005515
Gso18g0547 1040 SMART arm_5 941 982 IPR000225 GO:0005515
Gso18g0547 1040 SMART arm_5 809 850 IPR000225 GO:0005515
Gso18g0547 1040 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 1035 - -
Gso18g0547 1040 SUPERFAMILY ARM repeat 377 1024 IPR016024 -
Gso18g0547 1040 SMART Ubox_2 254 323 IPR003613 GO:0004842|GO:0016567
Gso18g0547 1040 Gene3D - 327 852 IPR011989 -
Gso18g0547 1040 Gene3D - 881 1035 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0547 Gso-Chr18 5706852 5714543 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0547 252 1029 U-box Gene Family AT1G20780 29.057 7.42e-86 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0547 - - gmx:102659945 1922.52