Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0540 ATGTCTTGTTCTGTGGCAGTTCCCACTTCCCCAGTGTTCTCTTTCTACAACAACAATAACAACGTTAACTCTTCCACCGCAGAACCTCTCATGCTCTCTCTTCCCATTCCCTCTACGACGCCGTCTTGCTCCTCATTATCTCCACCCTCCTCTCCCTTGTTGAAGAGAAAGAGACCCGCCAAACTCGACATTCCCGTCGCTTCTATCGCTTTTGCTGTCTCGCCGACGGCGGCGCCGTCGCCGGCGAGGGACGCCTTCGAGGTCGACGGACCTGGGTTTTCTGTGTTTTGCAAACGAGGAAGGAGGCATCATATGGAGGATTGTTTCTCCGCTGCCGTTGATCTTCACGGTCAACCAAAACAGGCCTTTTTCGGGATATTTGATGGGCATGGGGGAACAAAGGCTTCGGAATTCGCTGCACATAACTTGGAAAAGAATGTGTTGGAGGAGGTGGTTAGGAGAGATGAAAATGACATTGAGGAGGCAGTGAAGCATGGTTACCTCAACACAGATTCTGAATTCTTGAAGGAGGATCTTAATGGTGGCTCTTGCTGTGTGACAGCATTGATCAGGAATGGTAACCTTGTTGTGTCCAATGCTGGAGATTGTCGTGCTGTGATTAGCATAGGAGGTGTGGCAGAAGCCCTAACATCTGATCACAAGCCTTCTAGAGAAGATGAAAGGGACAGAATTGAGACTCAGGGTGGCTATGTTGATGTGTGCCGTGGTGTATGGAGGATACAAGGGTCATTGGCTGTTTCTAGGGGAATTGGAGATAGAAACCTGAAACAATGGGTCATAGCAGAACCTGAGACCAAAGTTCTTAAAATTGAACCTCAGCATGACTTGTTGATCTTAGCTTCAGATGGATTATGGGAAAAGGTTAGCAATCAGGAAGCAGTAGATATTGCTCGTCCTTTTTGTGTTGGGAACAATAAACAGCAACCTTTGCTGGCTTGTAAGAAACTCGTGGAATTATCTGTGTCACGAGGCTCTGTGGATGACATAAGTGTTATGATTATCAAATTGCAAAACTACATTTGA 1044 0.4693 MSCSVAVPTSPVFSFYNNNNNVNSSTAEPLMLSLPIPSTTPSCSSLSPPSSPLLKRKRPAKLDIPVASIAFAVSPTAAPSPARDAFEVDGPGFSVFCKRGRRHHMEDCFSAAVDLHGQPKQAFFGIFDGHGGTKASEFAAHNLEKNVLEEVVRRDENDIEEAVKHGYLNTDSEFLKEDLNGGSCCVTALIRNGNLVVSNAGDCRAVISIGGVAEALTSDHKPSREDERDRIETQGGYVDVCRGVWRIQGSLAVSRGIGDRNLKQWVIAEPETKVLKIEPQHDLLILASDGLWEKVSNQEAVDIARPFCVGNNKQQPLLACKKLVELSVSRGSVDDISVMIIKLQNYI* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0540 347 SMART PP2C_SIG_2 103 343 IPR001932 -
Gso18g0540 347 Gene3D - 91 347 IPR036457 -
Gso18g0540 347 PANTHER PROTEIN PHOSPHATASE 2C 3 346 IPR015655 GO:0004722|GO:0006470
Gso18g0540 347 SUPERFAMILY PP2C-like 92 345 IPR036457 -
Gso18g0540 347 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Gso18g0540 347 ProSiteProfiles PPM-type phosphatase domain profile. 92 343 IPR001932 -
Gso18g0540 347 Pfam Protein phosphatase 2C 94 336 IPR001932 -
Gso18g0540 347 CDD PP2Cc 92 343 IPR001932 -
Gso18g0540 347 SMART PP2C_4 80 341 IPR001932 -
Gso18g0540 347 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 3 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0540 Gso-Chr18 5583291 5585464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0540 1 347 PP2C-type Phosphatase Gene Family AT2G30020 57.683 2.63e-149 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0540 K17506 - gmx:100818903 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0540 18 5583291 5585464 Gso14g1645 14 48520364 48522687 PCT
Gso18g0540 18 5583291 5585464 Gso2g1940 2 43708531 43710992 PCT
Gso14g1645 14 48520364 48522687 Gso18g0540 18 5583291 5585464 PCT
Gso2g1940 2 43708531 43710992 Gso18g0540 18 5583291 5585464 PCT