Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0539 ATGGGTTTTTCTTGGATAAGAGGGAAGTGCATTGGTAAGGGCGCGTTTGGCACCGTCAGCGTCGCGCTTCGCAAACGCGACGATCAAACTCAAAATTTCGCGGTGAAGTCCGTGGATTTAAAAACGGGTCTCCCGGGTCAGCTCGAAGCGTTGGAGAATGAGATTCGGATTCTCCGGCGCATGTCCTCTCCGCACGTGGTAACTTTTCTCGGCGACGACGCCACGTGCGAGCAGCGGAACCTTCACATGGAGTACATGCCACGTGGTACGCTCGCTGACCTGGACGCTGACGTGGACGAAGCTTTAGTGAGACGCTACACGTGGTGCCTTGTGAGCGCGCTGAAGCACGTGCACTCAAACGGCGTCGTTCACTGCGACGTGAAAGGAAAGAACGTCCTCGTCGGAGACGGAGGGAAAGGTTTCAATTGCAAACTCGCCGACTTCGGATCGGCGGCGGAGTTCTCCGGCGAGGGGTTTCCGGCGGTGGTGCCGCGCGGGAGTCCGCTGTGGATGGCGCCGGAGGTGATTCGCCGGGAGTGGCAGGGTCCGGCGTCGGACGTGTGGTCGTTGGGATGCACGGTGATCGAGATGCTCACCGGAAAACCGCCGTGGGAGGGAAACTCCTTCGACGCGCTGAGTCGGATCGGGTTCTCCGGCGAGGTGCCCGAATTTCCGAGGCGGTTGTCGGAGCTCGGAAGGGATTTTCTGGAGAAGTGTTTGAGGAGGGAACCGTGGCGGCGGTGGAGCTGCGATCAGCTGCTGCAGCATCCGTTTTTGTTGCCGTGTGGCGAGATTGCGGAATCGTCGCCGCGGTGTGTTCTCGACCGAGTTGACACGGAGTTCGCCGAGTTCGACCAAGAAGAAGAAGAAGAAGAAGAAACGAGAATTGAAAATGAAAATTTTGCGAGGAGTAGAATTGGAAAACTGGCGATGAGGGTAAGGGTAAATTGGGAAACAGAAGGTTGGGTGGTGGTGAGGGAATTCGCTTCCGATGCGGAACCGGCGGTGGCGGTTGACAGTTCTGAGGACGTTAAAGACGGGGCATGTCCGGGAAATATTGGGAGCGTGAGGGTAGAAAAGGGAATTCATGTAGGGACAAATTTGGAATTTAAAGGTTTAGAAAACGAAAGGGTAAAAATAAAAATTTGGAATTTGGGTGGGAGGGGGTGGTTGGTGCAGTGCAACTACAGGGAGAGTAAAGCTAGTTGGAGGAGTCAGTGCGTGTGGGAAAATGTTGATAAGAAAAAAGGAATAATAATGAAAAAGAACATTTACAGGTTGTACTGTAAATTATTGAAATCACCTTGTTTGTTCTTGGAGTATTTAAATACATATTTATGTTTTGGGATTATTTATGTTGATTACTTTTCATGGCACCGTGACAAAAATATCTTGAGAATTTTTCTTAAGAATATTCAGGAACTAATAAGCGTATGTTTGGTGATGCGATACGATTATGCATTTTTTTTCTACGGTTACATTGAAACAATCTTGATTGTTTCTGATTTTTCACGATCATACCACAATTTTAACCGGTAA 1539 0.5023 MGFSWIRGKCIGKGAFGTVSVALRKRDDQTQNFAVKSVDLKTGLPGQLEALENEIRILRRMSSPHVVTFLGDDATCEQRNLHMEYMPRGTLADLDADVDEALVRRYTWCLVSALKHVHSNGVVHCDVKGKNVLVGDGGKGFNCKLADFGSAAEFSGEGFPAVVPRGSPLWMAPEVIRREWQGPASDVWSLGCTVIEMLTGKPPWEGNSFDALSRIGFSGEVPEFPRRLSELGRDFLEKCLRREPWRRWSCDQLLQHPFLLPCGEIAESSPRCVLDRVDTEFAEFDQEEEEEEETRIENENFARSRIGKLAMRVRVNWETEGWVVVREFASDAEPAVAVDSSEDVKDGACPGNIGSVRVEKGIHVGTNLEFKGLENERVKIKIWNLGGRGWLVQCNYRESKASWRSQCVWENVDKKKGIIMKKNIYRLYCKLLKSPCLFLEYLNTYLCFGIIYVDYFSWHRDKNILRIFLKNIQELISVCLVMRYDYAFFFYGYIETILIVSDFSRSYHNFNR* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0539 512 Gene3D Transferase(Phosphotransferase) domain 1 4 320 - -
Gso18g0539 512 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 3 356 - -
Gso18g0539 512 SMART serkin_6 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0539 512 CDD STKc_MAPKKK 4 259 - -
Gso18g0539 512 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 356 - -
Gso18g0539 512 SUPERFAMILY Protein kinase-like (PK-like) 5 260 IPR011009 -
Gso18g0539 512 ProSitePatterns Protein kinases ATP-binding region signature. 11 36 IPR017441 GO:0005524
Gso18g0539 512 Pfam Protein kinase domain 8 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso18g0539 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Gso18g0539 512 ProSiteProfiles Protein kinase domain profile. 5 259 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0539 Gso-Chr18 5571429 5573086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0539 5 333 MAP Kinase Kinase Kinase AT2G30040 60.177 4.85e-124 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Gso18g0539 Pkinase 1.9e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0539 - - gmx:100818366 1024.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0539 18 5571429 5573086 Gso14g1646 14 48544200 48545849 PCT
Gso18g0539 18 5571429 5573086 Gso2g1941 2 43723190 43724687 PCT
Gso14g1646 14 48544200 48545849 Gso18g0539 18 5571429 5573086 PCT
Gso2g1941 2 43723190 43724687 Gso18g0539 18 5571429 5573086 PCT