Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0536 ATGTCAATCCAACCTGACTCACCCAACAACAACACGTTGACCCAAATGTTTCAGAACATATTCTCAGACAACAGTAACATCATGCTTGCAGCCATCATTTCTCTCCTCCTAGTAATCCTCTTTGTCCTCCTTCTCCACCTCTATGCCAAGTTGTTCCTCGCTCAGGCACAGCCTCAGGCCCACGCCCGCCGCCGCCGGAGGAGGAGGCGGCGAAACACGGTGACAGTCTCCGACGTCCTCGGCCCGGCAAGGTTCCACCACTTCCACAGCTTCAACATAGAAGACAGTTCACCCCTCACAACAAAAGGCTTAGATTCTTCAACCATTAGAACAATTCCACTCTTCATCTATGAACCCAACAACAACAAGGTCCAAGAAGAAGAAGAAGAACTTGAATGTGTAATTTGCTTGAGTGCCTTTGTGAGTGGTGAAGTGGGGAGGTGCTTGCCAAAGTGTGGCCATGGCTTCCATGTGGAGTGCATTGACATGTGGTTGAGTTCACACTCCAATTGTCCTATTTGTAGAGCCTCAATTGTAGCAAGTGTTGTGGAGAATGATTCTAGGGTGGTGGTTTCATCAAGTGATCATCATCGTGATGAATTATATTACGGTGGAGATCATGATTTGGTTGAGATTGTGATTGAAAGTGGTGGTGCTCCAAGTTCTGAGATTATTAGAGAGGGTGATGGTAATGGAGGAGCAAGAACAAGTGTTTCTGTTGGGTCAGAAACTTCTTCTTCTGAGTTTTTTGGGTGCTCTTTGGAGAGAATGCTTGGCAAGGTTTTCCCATCAAGTAATGTAAATTAA 807 0.461 MSIQPDSPNNNTLTQMFQNIFSDNSNIMLAAIISLLLVILFVLLLHLYAKLFLAQAQPQAHARRRRRRRRRNTVTVSDVLGPARFHHFHSFNIEDSSPLTTKGLDSSTIRTIPLFIYEPNNNKVQEEEEELECVICLSAFVSGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRASIVASVVENDSRVVVSSSDHHRDELYYGGDHDLVEIVIESGGAPSSEIIREGDGNGGARTSVSVGSETSSSEFFGCSLERMLGKVFPSSNVN* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0536 268 MobiDBLite consensus disorder prediction 222 245 - -
Gso18g0536 268 CDD RING-H2_EL5_like 133 175 - -
Gso18g0536 268 Pfam Ring finger domain 132 175 IPR001841 -
Gso18g0536 268 SUPERFAMILY RING/U-box 127 181 - -
Gso18g0536 268 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 1 266 IPR044675 -
Gso18g0536 268 SMART ring_2 133 174 IPR001841 -
Gso18g0536 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 181 IPR013083 -
Gso18g0536 268 PANTHER - 1 266 - -
Gso18g0536 268 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0536 Gso-Chr18 5536531 5537640 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0536 5 238 Rapid Response to Elicitors AT3G16720 32.377 4.83e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0536 - - gmx:100816238 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso18g0536 18 5536531 5537640 Gso14g1651 14 48598557 48600647 PCT
Gso18g0536 18 5536531 5537640 Gso2g1946 2 43787440 43788881 PCT
Gso14g1651 14 48598557 48600647 Gso18g0536 18 5536531 5537640 PCT
Gso2g1946 2 43787440 43788881 Gso18g0536 18 5536531 5537640 PCT