Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso18g0535 ATGTCCTCTGAAGAACAGCACCACCACCACTTCATTCAGTGGCACTTAAACAAGCTCATCAATGGTTCAAGTTCAACCTTTCACTCCTATAACCAAAGCCTGTTCCTATTGCTGTGGTTTTTTGCCATTCTCATCTTTGTACCTTCATTGTTCTTGTGCTTCCATTTGTGCTGTCGCCGTTTCTCGCAACAACAAAGGTCCACTTCTACAACTGTGGTCTCTCCTCTACCTGATCAATGTGTTGTTGGAATTGAGTTCATGGCAAACCACACTCTGGTACCATCTTCAACTAGCATGGTTGGTGCAGGGTTTGAGAAGGAGGAATGTTGCATATGTTTGAGTCTCTTCCAAAGTAATGAAAAACTGAAGGTGTTAATTGAATGTGAGCATGTTTTTCATTCTGAGTGCTTGGACATGTGGCTTAGTGGACATCCTAGTTGCCCTCTATGCAGGGCCTCCCTCCATGTTAGTGAGAATCTCAAGAAATGA 489 0.4335 MSSEEQHHHHFIQWHLNKLINGSSSTFHSYNQSLFLLLWFFAILIFVPSLFLCFHLCCRRFSQQQRSTSTTVVSPLPDQCVVGIEFMANHTLVPSSTSMVGAGFEKEECCICLSLFQSNEKLKVLIECEHVFHSECLDMWLSGHPSCPLCRASLHVSENLKK* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso18g0535 162 SMART ring_2 109 150 IPR001841 -
Gso18g0535 162 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 156 IPR044675 -
Gso18g0535 162 Pfam Ring finger domain 108 151 IPR001841 -
Gso18g0535 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 159 IPR013083 -
Gso18g0535 162 SUPERFAMILY RING/U-box 105 157 - -
Gso18g0535 162 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Gso18g0535 162 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso18g0535 Gso-Chr18 5523036 5523524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso18g0535 66 153 C3H Transcription Factor Family AT2G27940 40.909 4.37e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso18g0535 - - gmx:102667569 338.576